Determining multiallelic complex copy number and sequence variation from high coverage exome sequencing data

BMC Genomics

Table 1 Characteristics of exome sequences analysed

Centre name	Samples	Samples with > 50 reads per exon	Sample with a copy number call	Samples with a copy number call P > 0.95*	Sequence enrichment method
BCM	228	228	147	129 (88 %)	HSGC VCRome custom array
BGI	894	866	866	795 (91 %)	NimbleGen SeqCap_EZ_Exome v2
BI	830	161	161	140 (87 %)	Agilent SureSelect_All_Exon_V2
WUGSC	503	397	288	221 (76 %)	NimbleGen SeqCap_EZ_Exome v3

ISSN: 1471-2164