Table 3 Discrepant copy number calls between exome sequence read depth (SRD) analysis and previous analyses
Sample | Pop | Batch | Posterior probability of Exome SRD call | Copy number from Exome SRD | PRT and nanostring copy number | Copy number from whole genome SRD |
|---|---|---|---|---|---|---|
NA18858 | YRI | BGI | 0.589 | 6 | 8 | 8 |
NA18861 | YRI | BGI | 0.996 | 5 | 6 | 6 |
NA11892 | CEU | BGI | 0.968 | 3 | 5 | 3 |
NA11893 | CEU | BGI | 0.977 | 4 | 5 | 5 |
NA12156 | CEU | BCM | 0.610 | 5 | 6 | na |
NA18912 | YRI | BI | 0.982 | 6 | 5 | 6 |
NA12761 | CEU | WUGSC | 0.995 | 4 | 3 | na |