Identification and characterization of microRNAs from in vitro-grown pear shoots infected with Apple stem grooving virus in response to high temperature using small RNA sequencing

Liu, Juan; Zhang, XueJiao; Zhang, FangPeng; Hong, Ni; Wang, GuoPing; Wang, Aiming; Wang, LiPing

doi:10.1186/s12864-015-2126-8

Table 2 miRNAs expressed differentially between the 24 °C and 37 °C treatments from in vitro-grown shoots of P. pyrifolia

From: Identification and characterization of microRNAs from in vitro-grown pear shoots infected with Apple stem grooving virus in response to high temperature using small RNA sequencing

miRNA name	T24		T37		Fold-change log₂(T37/T24)	P-value	Mode	Sig-lable
miRNA name	Counts	Normalized	Counts	Normalized	Fold-change log₂(T37/T24)	P-value	Mode	Sig-lable
miR1043-3p	43	1.9	16	0.78	−1.28	0.001	Down	**
miR3627-5p	368	16.29	1827	89.51	2.46	2.29e-265	Up	**
miR397a	56569	2503.83	104360	5112.87	1.03	0	Up	**
miR477b	38	1.68	13	0.64	−1.4	0.001	Down	**
miR4993	1677	74.23	749	36.7	−1.02	5.55e-62	Down	**
miR5519	18	0.8	34	1.67	1.06	0.01	Up	**
miR5801	90	3.98	40	1.96	−1.02	0.0001	Down	**
novel124	45	1.99	18	0.88	−1.18	0.003	Down	**
novel125	30	1.33	0	0.01	−7.05	4.32e-09	Down	**
novel147	28	1.24	12	0.59	−1.07	0.02	Down	*
novel160	28	1.24	58	2.84	1.20	0.0002	Up	**
novel166	39	1.73	0	0.01	−7.43	1.32e-11	Down	**
novel168	85	3.76	0	0.01	−8.56	1.82e-24	Down	**
novel177	118	5.22	0	0.01	−9.02	1.09e-33	Down	**
novel188	42	1.86	0	0.01	−7.54	1.91e-12	Down	**
novel19	214	9.5	611	29.93	1.66	2e-54	Up	**
novel190	45	1.99	0	0.01	−7.64	2.77e-13	Down	**
novel197	27	1.2	10	0.49	−1.29	0.01	Down	*
novel202	31	1.37	0	0.01	−7.1	2.27e-09	Down	**
novel203	139	6.15	0	0.01	−9.26	1.46e-39	Down	**
novel228	11	0.49	25	1.22	1.33	0.008	Up	**
novel233	12	0.53	22	1.08	1.02	0.04	Up	*
novel241	145	6.42	0	0.01	−9.33	3.08e-41	Down	**
novel246	31	1.37	5	0.25	−2.49	2.84e-05	Down	**
novel247	29	1.28	0	0.01	−7	8.22e-09	Down	**
novel250	11	0.49	23	1.13	1.21	0.02	Up	*
novel26	24	1.06	0	0.01	−6.73	2.05e-07	Down	**
novel262	18817	832.87	0	0.01	−16.35	0	Down	**
novel266	327	14.47	0	0.01	−10.5	4.1e-92	Down	**
novel27	37	1.64	0	0.01	−7.36	4.77e-11	Down	**
novel281	25	1.11	11	0.54	−1.04	0.04	Down	*
novel290	57	2.52	0	0.01	−7.98	1.22e-16	Down	**
novel306	18	0.8	42	2.06	1.37	0.00046	Up	**
novel308	29	1.28	0	0.01	−7	8.22e-09	Down	**
novel312	26	1.15	0	0.01	−6.85	5.67e-08	Down	**
novel337	131	5.8	364	17.83	1.62	4.89e-32	Up	**
novel338	16	0.71	29	1.42	1.004	0.02	Up	*
novel345	961	42.53	0	0.01	−12.05	2.43e-269	Down	**
novel348	35	1.55	0	0.01	−7.28	1.73e-10	Down	**
novel363	7	0.31	24	1.18	1.92	0.00078	Up	**
novel379	0	0.01	34	1.67	7.38	9.41e-12	Up	**
novel385	0	0.01	48	2.35	7.88	2.77e-16	Up	**
novel393	0	0.01	38	1.86	7.54	4.78e-13	Up	**
novel395	0	0.01	48	2.35	7.88	2.77e-16	Up	**
novel412	0	0.01	84	4.12	8.68	6.19e-28	Up	**
novel413	0	0.01	39	1.91	7.58	2.27e-13	Up	**
novel421	0	0.01	21	1.03	6.69	1.52e-07	Up	**
novel423	0	0.01	44	2.16	7.75	5.46e-15	Up	**
novel429	0	0.01	23	1.13	6.82	3.42e-08	Up	**
novel438	0	0.01	116	5.68	9.15	2.72e-38	Up	**
novel439	0	0.01	22	1.08	6.75	7.2e-08	Up	**
novel447	0	0.01	42	2.06	7.68	2.42e-14	Up	**
novel457	0	0.01	33	1.62	7.34	1.98e-11	Up	**
novel476	0	0.01	94	4.61	8.85	3.59e-31	Up	**
novel482	0	0.01	165	8.08	9.66	3.77e-54	Up	**
novel497	0	0.01	22	1.08	6.75	7.2e-08	Up	**
novel498	0	0.01	41	2.01	7.65	5.11e-14	Up	**
novel504	0	0.01	49	2.4	7.9	1.32e-16	Up	**
novel509	0	0.01	67	3.28	8.36	1.97e-22	Up	**
novel516	0	0.01	30	1.47	7.2	1.85e-10	Up	**
novel52	35	1.55	15	0.73	−1.08	0.01	Down	**
novel526	0	0.01	142	6.96	9.44	1.05e-46	Up	**
novel531	0	0.01	40	1.96	7.61	1.08e-13	Up	**
novel533	0	0.01	26	1.27	6.99	3.65e-09	Up	**
novel540	0	0.01	216	10.58	10.05	1.18e-70	Up	**
novel543	0	0.01	24	1.18	6.88	1.62e-08	Up	**
novel558	0	0.01	22	1.08	6.75	7.2e-08	Up	**
novel560	0	0.01	22	1.08	6.75	7.2e-08	Up	**
novel564	0	0.01	24	1.18	6.88	1.62e-08	Up	**
novel566	0	0.01	30	1.47	7.2	1.85e-10	Up	**
novel573	0	0.01	25	1.22	6.94	7.7e-09	Up	**
novel579	0	0.01	41	2.01	7.65	5.11e-14	Up	**
novel585	0	0.01	32	1.57	7.29	4.18e-11	Up	**
novel586	0	0.01	24	1.18	6.88	1.62e-08	Up	**
novel598	0	0.01	37	1.81	7.5	1.01e-12	Up	**
novel6	224	9.91	82	4.02	−1.3	1.5e-13	Down	**
novel601	0	0.01	26	1.27	6.99	3.65e-09	Up	**
novel603	0	0.01	66	3.23	8.34	4.14e-22	Up	**
novel615	0	0.01	118	5.78	9.18	6.13e-39	Up	**
novel69	842	37.27	372	18.23	−1.03	9.68e-33	Down	**
novel8	31	1.37	58	2.84	1.05	0.00082	Up	**
novel83	24	1.06	0	0.01	−6.73	2.05e-07	Down	**
novel84	27	1.2	0	0.01	−6.9	2.98e-08	Down	**
novel99	23	1.02	0	0.01	−6.67	3.91e-07	Down	**

* represnt Fold-change(log T37/T24) >1.0 or Fold-change(log T37/T24) <-1.0, and 0.01<=P -values <0.05; ** represnt Fold-change(log T37/T24) >1.0 or Fold-change(log T37/T24) <-1.0, and P -values <0.01

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