Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

BMC Genomics

Table 1 Summary of read mapping

Sample	Replicate	Raw read pairs	Mapped read pairs	Percentage
LA4345 seedling		9,733,364	6,724,767	76.9
LA2397 flower		7,122,453	5,189,153	81.9
LA1589
Seedling		9,464,816	6,228,539	73.6
2 dpa fruit	R1	1,855,723	1,497,635	83.5
	R2	1,477,166	1,191,334	85.0
	R3	1,538,156	1,279,635	86.6
	subtotal	4,871,045	3,968,604	81.5 %
5 dpa fruit	R1	4,061,009	3,248,627	84.9
	R2	3,311,563	2,378,533	78.5
	R3	3,998,480	3,225,436	85.8
	subtotal	11,371,052	8,852,596	77.9 %
10 dpa fruit	R1	2,980,137	2,344,077	81.9
	R2	3,102,963	2,572,168	86.4
	R3	4,456,793	3,576,141	83.2
	subtotal	10,539,893	8,492,386	80.6 %
Total		43,637,807	33,227,506	76.1 %

The numbers in Bold is the sums of the three replicates for 2, 5 and 10 dpa fruit, respectively

ISSN: 1471-2164