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Table 2 Gene showing differential splicing during early fruit development

From: Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

Gene

Locus

sqrt(JS)

q_value

Description

Set A. Differential splicing between 2 and 5 DPA

XLOC_019368

SL2.50ch06:41258292-41261163

0.8153

0.0196

 

Solyc01g008370.2

SL2.50ch01:2477505-2483463

0.4339

0.0196

26S proteasome regulatory subunit; Mov34/MPN/PAD-1

Solyc02g065080.2

SL2.50ch02:36247331-36257903

0.5335

0.0478

bisphosphoglycerate-dependent phosphoglycerate mutase; Phosphoglycerate mutase

Solyc02g078550.2

SL2.50ch02:43208052-43218654

0.6032

0.0196

RNA polymerase II C-terminal domain phosphatase-like 1; NLI interacting factor

Solyc05g056310.2

SL2.50ch05:65645696-65652967

0.7211

0.0196

T-complex protein 1 subunit gamma

Solyc07g040980.2

SL2.50ch07:51437477-51452251

0.3527

0.0478

Genomic DNA chromosome 5 P1 clone MWD9

Solyc07g052290.1

SL2.50ch07:60781101-60783578

0.5739

0.0196

Membrane-associated zinc metalloprotease family protein expressed; putative membrane-associated zinc metallopeptidase

Solyc09g007390.2

SL2.50ch09:978653-981575

0.6351

0.0196

Mitochondrial import inner membrane translocase subunit TIM14; Heat shock protein DnaJ, N-terminal

Solyc11g008580.1

SL2.50ch11:2764516-2775461

0.6815

0.0196

Ariadne-like ubiquitin ligase; Zinc finger, C6HC-type

Solyc11g066370.1

SL2.50ch11:52124928-52138411

0.5251

0.0196

DNA ligase; ATP-dependent DNA ligase

Set B. Differential splicing between 5 and 10 DPA

Solyc03g094030.2

SL2.50ch03:55750063-55753767

0.6323

0.0196

Mediator of RNA polymerase II transcription subunit 31; Mediator complex subunit Med31

Solyc04g015190.2

SL2.50ch04:5371123-5375218

0.8097

0.0196

Glucan endo-1 3-beta-glucosidase 5; Glycoside hydrolase subgroup, catalytic core

Solyc06g071770.2

SL2.50ch06:44200874-44205161

0.4640

0.0196

ZZ type zinc finger domain-containing protein (Fragment); Octicosapeptide/Phox/Bem1p

Solyc09g072650.2

SL2.50ch09:65265342-65271839

0.7751

0.0196

Calmodulin-binding protein MPCBP; Tetratricopeptide-like helical; similar to NO POLLEN GERMINATION RELATED 2, NPGR2 of Arabidopsis

Solyc09g082540.2

SL2.50ch09:68259583-68265738

0.4562

0.0478

Tetratricopeptide repeat protein 28; Tetratricopeptide-like helical

Solyc10g005880.2

SL2.50ch10:673775-683075

0.6752

0.0196

Uridine kinase

Solyc10g074750.1

SL2.50ch10:58404701-58410651

0.8325

0.0196

Unknown Protein

Solyc12g088050.1

SL2.50ch12:63541646-63546252

0.6013

0.0478

Rhamnogalacturonate lyase

Set C. Differential splicing between 2 and 10 DPA

Solyc01g005030.2

SL2.50ch01:44370-54,566

0.7673

0.0196

Serine/threonine-protein kinase 36; SlMAPKKK1

Solyc01g099300.2

SL2.50ch01:89576746-89599770

0.5204

0.0196

MORC family CW-type zinc finger 3; ATP-binding region, ATPase-like; Histidine kinase, DNA gyrase B-, and HSP90-like ATPase family protein

Solyc01g100110.2

SL2.50ch01:90197631-90201738

0.4835

0.0196

Integrin-linked kinase-associated serine/threonine phosphatase 2C; Protein phosphatase 2C

Solyc01g108200.2

SL2.50ch01:95550586-95559361

0.6657

0.0196

similar to AtCYO1, SCO2 | protein disulfide isomerases

Solyc08g077690.2

SL2.50ch08:61596389-61602289

0.8136

0.0196

Chromodomain helicase DNA binding protein 5; SNF2-related

Solyc10g008110.2

SL2.50ch10:2239307-2246349

0.6772

0.0196

Acyl-CoA oxidase 6; Acyl-CoA oxidase

Solyc10g044450.1

SL2.50ch10:26412570-26436844

0.6054

0.0196

Upf3 regulator of nonsense transcripts-like protein B; Regulator of nonsense-mediated decay UPF3

Solyc11g071540.1

SL2.50ch11:54969330-54978414

0.4903

0.0478

Unknown Protein

Solyc11g071700.1

SL2.50ch11:55099644-55120910

0.5709

0.0478

Ubiquitin carboxyl-terminal hydrolase family protein expressed; ubiquitin carboxyl-terminal hydrolase 2