From: Identification of alternative splicing events by RNA sequencing in early growth tomato fruits
Gene | Locus | sqrt(JS) | q_value | Description |
---|---|---|---|---|
Set A. Differential splicing between 2 and 5 DPA | ||||
XLOC_019368 | SL2.50ch06:41258292-41261163 | 0.8153 | 0.0196 | Â |
Solyc01g008370.2 | SL2.50ch01:2477505-2483463 | 0.4339 | 0.0196 | 26S proteasome regulatory subunit; Mov34/MPN/PAD-1 |
Solyc02g065080.2 | SL2.50ch02:36247331-36257903 | 0.5335 | 0.0478 | bisphosphoglycerate-dependent phosphoglycerate mutase; Phosphoglycerate mutase |
Solyc02g078550.2 | SL2.50ch02:43208052-43218654 | 0.6032 | 0.0196 | RNA polymerase II C-terminal domain phosphatase-like 1; NLI interacting factor |
Solyc05g056310.2 | SL2.50ch05:65645696-65652967 | 0.7211 | 0.0196 | T-complex protein 1 subunit gamma |
Solyc07g040980.2 | SL2.50ch07:51437477-51452251 | 0.3527 | 0.0478 | Genomic DNA chromosome 5 P1 clone MWD9 |
Solyc07g052290.1 | SL2.50ch07:60781101-60783578 | 0.5739 | 0.0196 | Membrane-associated zinc metalloprotease family protein expressed; putative membrane-associated zinc metallopeptidase |
Solyc09g007390.2 | SL2.50ch09:978653-981575 | 0.6351 | 0.0196 | Mitochondrial import inner membrane translocase subunit TIM14; Heat shock protein DnaJ, N-terminal |
Solyc11g008580.1 | SL2.50ch11:2764516-2775461 | 0.6815 | 0.0196 | Ariadne-like ubiquitin ligase; Zinc finger, C6HC-type |
Solyc11g066370.1 | SL2.50ch11:52124928-52138411 | 0.5251 | 0.0196 | DNA ligase; ATP-dependent DNA ligase |
Set B. Differential splicing between 5 and 10 DPA | ||||
Solyc03g094030.2 | SL2.50ch03:55750063-55753767 | 0.6323 | 0.0196 | Mediator of RNA polymerase II transcription subunit 31; Mediator complex subunit Med31 |
Solyc04g015190.2 | SL2.50ch04:5371123-5375218 | 0.8097 | 0.0196 | Glucan endo-1 3-beta-glucosidase 5; Glycoside hydrolase subgroup, catalytic core |
Solyc06g071770.2 | SL2.50ch06:44200874-44205161 | 0.4640 | 0.0196 | ZZ type zinc finger domain-containing protein (Fragment); Octicosapeptide/Phox/Bem1p |
Solyc09g072650.2 | SL2.50ch09:65265342-65271839 | 0.7751 | 0.0196 | Calmodulin-binding protein MPCBP; Tetratricopeptide-like helical; similar to NO POLLEN GERMINATION RELATED 2, NPGR2 of Arabidopsis |
Solyc09g082540.2 | SL2.50ch09:68259583-68265738 | 0.4562 | 0.0478 | Tetratricopeptide repeat protein 28; Tetratricopeptide-like helical |
Solyc10g005880.2 | SL2.50ch10:673775-683075 | 0.6752 | 0.0196 | Uridine kinase |
Solyc10g074750.1 | SL2.50ch10:58404701-58410651 | 0.8325 | 0.0196 | Unknown Protein |
Solyc12g088050.1 | SL2.50ch12:63541646-63546252 | 0.6013 | 0.0478 | Rhamnogalacturonate lyase |
Set C. Differential splicing between 2 and 10 DPA | ||||
Solyc01g005030.2 | SL2.50ch01:44370-54,566 | 0.7673 | 0.0196 | Serine/threonine-protein kinase 36; SlMAPKKK1 |
Solyc01g099300.2 | SL2.50ch01:89576746-89599770 | 0.5204 | 0.0196 | MORC family CW-type zinc finger 3; ATP-binding region, ATPase-like; Histidine kinase, DNA gyrase B-, and HSP90-like ATPase family protein |
Solyc01g100110.2 | SL2.50ch01:90197631-90201738 | 0.4835 | 0.0196 | Integrin-linked kinase-associated serine/threonine phosphatase 2C; Protein phosphatase 2C |
Solyc01g108200.2 | SL2.50ch01:95550586-95559361 | 0.6657 | 0.0196 | similar to AtCYO1, SCO2 | protein disulfide isomerases |
Solyc08g077690.2 | SL2.50ch08:61596389-61602289 | 0.8136 | 0.0196 | Chromodomain helicase DNA binding protein 5; SNF2-related |
Solyc10g008110.2 | SL2.50ch10:2239307-2246349 | 0.6772 | 0.0196 | Acyl-CoA oxidase 6; Acyl-CoA oxidase |
Solyc10g044450.1 | SL2.50ch10:26412570-26436844 | 0.6054 | 0.0196 | Upf3 regulator of nonsense transcripts-like protein B; Regulator of nonsense-mediated decay UPF3 |
Solyc11g071540.1 | SL2.50ch11:54969330-54978414 | 0.4903 | 0.0478 | Unknown Protein |
Solyc11g071700.1 | SL2.50ch11:55099644-55120910 | 0.5709 | 0.0478 | Ubiquitin carboxyl-terminal hydrolase family protein expressed; ubiquitin carboxyl-terminal hydrolase 2 |