Skip to main content

Table 2 Gene showing differential splicing during early fruit development

From: Identification of alternative splicing events by RNA sequencing in early growth tomato fruits

Gene Locus sqrt(JS) q_value Description
Set A. Differential splicing between 2 and 5 DPA
XLOC_019368 SL2.50ch06:41258292-41261163 0.8153 0.0196  
Solyc01g008370.2 SL2.50ch01:2477505-2483463 0.4339 0.0196 26S proteasome regulatory subunit; Mov34/MPN/PAD-1
Solyc02g065080.2 SL2.50ch02:36247331-36257903 0.5335 0.0478 bisphosphoglycerate-dependent phosphoglycerate mutase; Phosphoglycerate mutase
Solyc02g078550.2 SL2.50ch02:43208052-43218654 0.6032 0.0196 RNA polymerase II C-terminal domain phosphatase-like 1; NLI interacting factor
Solyc05g056310.2 SL2.50ch05:65645696-65652967 0.7211 0.0196 T-complex protein 1 subunit gamma
Solyc07g040980.2 SL2.50ch07:51437477-51452251 0.3527 0.0478 Genomic DNA chromosome 5 P1 clone MWD9
Solyc07g052290.1 SL2.50ch07:60781101-60783578 0.5739 0.0196 Membrane-associated zinc metalloprotease family protein expressed; putative membrane-associated zinc metallopeptidase
Solyc09g007390.2 SL2.50ch09:978653-981575 0.6351 0.0196 Mitochondrial import inner membrane translocase subunit TIM14; Heat shock protein DnaJ, N-terminal
Solyc11g008580.1 SL2.50ch11:2764516-2775461 0.6815 0.0196 Ariadne-like ubiquitin ligase; Zinc finger, C6HC-type
Solyc11g066370.1 SL2.50ch11:52124928-52138411 0.5251 0.0196 DNA ligase; ATP-dependent DNA ligase
Set B. Differential splicing between 5 and 10 DPA
Solyc03g094030.2 SL2.50ch03:55750063-55753767 0.6323 0.0196 Mediator of RNA polymerase II transcription subunit 31; Mediator complex subunit Med31
Solyc04g015190.2 SL2.50ch04:5371123-5375218 0.8097 0.0196 Glucan endo-1 3-beta-glucosidase 5; Glycoside hydrolase subgroup, catalytic core
Solyc06g071770.2 SL2.50ch06:44200874-44205161 0.4640 0.0196 ZZ type zinc finger domain-containing protein (Fragment); Octicosapeptide/Phox/Bem1p
Solyc09g072650.2 SL2.50ch09:65265342-65271839 0.7751 0.0196 Calmodulin-binding protein MPCBP; Tetratricopeptide-like helical; similar to NO POLLEN GERMINATION RELATED 2, NPGR2 of Arabidopsis
Solyc09g082540.2 SL2.50ch09:68259583-68265738 0.4562 0.0478 Tetratricopeptide repeat protein 28; Tetratricopeptide-like helical
Solyc10g005880.2 SL2.50ch10:673775-683075 0.6752 0.0196 Uridine kinase
Solyc10g074750.1 SL2.50ch10:58404701-58410651 0.8325 0.0196 Unknown Protein
Solyc12g088050.1 SL2.50ch12:63541646-63546252 0.6013 0.0478 Rhamnogalacturonate lyase
Set C. Differential splicing between 2 and 10 DPA
Solyc01g005030.2 SL2.50ch01:44370-54,566 0.7673 0.0196 Serine/threonine-protein kinase 36; SlMAPKKK1
Solyc01g099300.2 SL2.50ch01:89576746-89599770 0.5204 0.0196 MORC family CW-type zinc finger 3; ATP-binding region, ATPase-like; Histidine kinase, DNA gyrase B-, and HSP90-like ATPase family protein
Solyc01g100110.2 SL2.50ch01:90197631-90201738 0.4835 0.0196 Integrin-linked kinase-associated serine/threonine phosphatase 2C; Protein phosphatase 2C
Solyc01g108200.2 SL2.50ch01:95550586-95559361 0.6657 0.0196 similar to AtCYO1, SCO2 | protein disulfide isomerases
Solyc08g077690.2 SL2.50ch08:61596389-61602289 0.8136 0.0196 Chromodomain helicase DNA binding protein 5; SNF2-related
Solyc10g008110.2 SL2.50ch10:2239307-2246349 0.6772 0.0196 Acyl-CoA oxidase 6; Acyl-CoA oxidase
Solyc10g044450.1 SL2.50ch10:26412570-26436844 0.6054 0.0196 Upf3 regulator of nonsense transcripts-like protein B; Regulator of nonsense-mediated decay UPF3
Solyc11g071540.1 SL2.50ch11:54969330-54978414 0.4903 0.0478 Unknown Protein
Solyc11g071700.1 SL2.50ch11:55099644-55120910 0.5709 0.0478 Ubiquitin carboxyl-terminal hydrolase family protein expressed; ubiquitin carboxyl-terminal hydrolase 2