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Table 1 Details of the zebrafish sRNA deep sequencing datasets

From: Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish

Library Replicates Total number of reads Total number of reads (in millions) Percentage of reads mapped
Embryo Embryo1 7,565,225 7.6 94.4
Embryo2 10,202,969 10.2 94.8
Embryo3 32,247,131 32.2 94.8
Male Brain Male Brain1 5,101,418 5.1 97.8
Male Brain2 6,533,205 6.5 97.3
Male Brain3 10,518,347 10.5 97.0
Female Brain Female Brain1 2,338,429 2.3 96.7
Female Brain2 3,278,013 3.3 97.5
Female Brain3 12,648,618 12.6 97.8
Male Gut Male Gut1 16,232,210 16.2 97.1
Male Gut2 8,864,108 8.9 97.7
Male Gut3 3,117,877 3.1 95.8
Female Gut Female Gut1 13,939,922 13.9 97.4
Female Gut2 8,260,495 8.3 97.8
Female Gut3 7,493,835 7.5 97.9
Male Liver Male Liver1 18,404,267 18.4 97.8
Male Liver2 9,369,428 9.4 97.4
Male Liver3 4,639,550 4.6 97.1
Female Liver Female Liver1 5,060,891 5.1 97.0
Female Liver2 8,162,716 8.2 97.2
Female Liver3 1,646,108 1.6 96.4
Ovary Ovary1 8,824,267 8.8 95.8
Ovary2 14,310,754 14.3 95.9
Ovary3 25,898,221 25.9 95.9
Testis Testis1 17,427,858 17.4 92.5
Testis2 20,235,869 20.2 92.2
Testis3 14,203,535 14.2 92.5
Eye Eye1 9,398,588 9.4 96.0
Eye2 5,722,393 5.7 95.5
Eye3 2,854,316 2.9 95.9
Heart Heart1 38,070,247 38.1 95.2
Heart2 34,828,065 34.8 96.2
  1. Each tissue library comprised of three biological replicates. One of the replicate of the heart did not cluster well with the other replicates and was not considered for further analysis. The table shows the number of processed (adaptor trimmed, > = 18nt) reads for each biological replicate. Around 92–98% of reads mapped to the zebrafish genome