Fig. 6
From: Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2
a log2fold ratios (y axis) and their corresponding average of normalized counts (x axis) for all DE genes between Df/+Bl6 and +129/+Bl6 MEFs. Positive values indicate higher expression in +129/+Bl6 MEFs, while negative values indicate higher expression in Df/+Bl6 MEFs. Shown in red are all the DE genes present on chromosome 4. b log2fold ratios for DE 129S5/SvEvBrd alleles (y axis) and DE C57Bl6/J alleles (x axis) in Df/+Bl6 MEFs. Notice the high degree of correlation between the allelic log2fold changes when compared to a perfect correlation score (1, blue dashed line). Genes shown in red fall within the deletion sequence, and therefore display a different behavior compared to other alleles