Fig. 4From: Integrated genomics approach to identify biologically relevant alterations in fewer samplesMutant NRBP1 is required for tumor cell survival and is oncogenic in NIH3T3 cells. Knockdown of mutant NRBP1 expression with shRNA inhibits transformation and survival of HNSCC cell lines. a Western blot analysis of total NRBP1 expression level in HNSCC cell lines. NRBP1 encodes for three different nuclear receptor binding protein isoform: 60Â kDa, 51Â kDa and 43Â kDa in NT8e cells (lane 1), OT9 cells (lane 2). AW13516 cells express only two isoforms (lane 3). b Western blot representation of NRBP1 partial knockdown by two independent hairpins (shNRBP1#1 and shNRBP1#2) in NT8e and OT9 cells. The hairpin constructs inhibit cell survival as assessed by cell counting as described in methods. c and anchorage-independent growth as assessed by colony formation in soft agar d in the NT8e cells harboring an NRBP1 Q73* mutation, but not the OT9 cells, which express WT NRBP1. shGFP, a hairpin specific for green fluorescent protein, was used as a negative control. All results are normalized to survival or colony formation by cells infected with empty vector. Images were taken at 10X magnification. e Western blot analysis of NRBP1 wild type and mutant (Q73*) in NIH-3Â T3 cells. Vector control, NIH-3Â T3 clones overexpressing wild-type and mutant NRBP1 is shown. NRBP1 Q73* mutation expresses 51Â kDa isoform, while two isoform of 60Â kDa and 51Â kDa can be seen in 3Â T3 clones overexpressing wild-type NRBP1. Western blot analysis of total and phosphorylated MAPK in NIH-3Â T3 clones expressing NRBP1 wild type (lane 2) and mutant NRBP1 (Q73*). f Representative images (taken at 20x) of soft agar colony formed by NIH-3Â T3 cells expressing NRBP1 wild type and Q73*. Bar graph representation of number of soft agar colonies formed by stable NIH-3Â T3 clones. NIH-3Â T3 cells expressing EGFR VIII was used as positive control and relative comparison of transforming ability of mutant NRBP1. *** P-value <0.0001, ** P-value <0.001Back to article page