Skip to main content
Fig. 5 | BMC Genomics

Fig. 5

From: GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data

Fig. 5

The interaction landscape of NR4A2 in K562 cells (hg19) as determined by ChIA-PET (chr2:156898860–158248860). See associated text for more details on processing. All identified interactions are shown in the top panel, with promoter:promoter interactions and promoter:enhancer interactions shown in the panels below. This gene is involved in interactions with the promoters of two nearby genes (GPD2 and GALNT5) and a small number of enhancers. The height of each curve corresponds to negative logarithm of the FDR for each interaction. Promoter:promoter interactions are shown in green, promoter-enhancer interactions in purple, promoter:distal interactions in orange and promoter:ctcf interactions are displayed in blue

Back to article page
\