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Table 1 Genes with the highest number of promoter:enhancer interactions in RNA Polymerase II ChIA-PET with 8WG16 antibody in human K562 cell line, replicate 1 [21], see associated text for more details on processing of this dataset

From: GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data

Ensembl ID HGNC Symbol Number of interactions Number of promoter:promoter interactions Number of promoters Number of promoter:enhancer interactions Number of enhancers
ENSG00000177000 MTHFR 934 686 7 233 9
ENSG00000011021 CLCN6 901 686 7 208 9
ENSG00000183337 BCOR 2585 2444 1 110 14
ENSG00000137193 PIM1 167 60 1 107 42
ENSG00000007944 MYLIP 721 485 2 97 38
ENSG00000120949 TNFRSF8 198 91 1 84 3
ENSG00000153234 NR4A2 671 541 2 82 5
ENSG00000253276 CCDC71L 303 186 3 76 12
ENSG00000116717 GADD45A 537 317 1 73 12
ENSG00000172216 CEBPB 414 265 8 65 21
  1. A window size of 2.5 kb around TSSs, defined using the FANTOM5 robust tag cluster set, was used to define promoters. Enhancers and other chromatin states were defined using the Genome Segments K562 track. The number of interactions is calculated as the sum of the PET counts of all anchors overlapping the promoter region of a gene
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