Table 1 Genes with the highest number of promoter:enhancer interactions in RNA Polymerase II ChIA-PET with 8WG16 antibody in human K562 cell line, replicate 1 [21], see associated text for more details on processing of this dataset
Ensembl ID | HGNC Symbol | Number of interactions | Number of promoter:promoter interactions | Number of promoters | Number of promoter:enhancer interactions | Number of enhancers |
|---|---|---|---|---|---|---|
ENSG00000177000 | MTHFR | 934 | 686 | 7 | 233 | 9 |
ENSG00000011021 | CLCN6 | 901 | 686 | 7 | 208 | 9 |
ENSG00000183337 | BCOR | 2585 | 2444 | 1 | 110 | 14 |
ENSG00000137193 | PIM1 | 167 | 60 | 1 | 107 | 42 |
ENSG00000007944 | MYLIP | 721 | 485 | 2 | 97 | 38 |
ENSG00000120949 | TNFRSF8 | 198 | 91 | 1 | 84 | 3 |
ENSG00000153234 | NR4A2 | 671 | 541 | 2 | 82 | 5 |
ENSG00000253276 | CCDC71L | 303 | 186 | 3 | 76 | 12 |
ENSG00000116717 | GADD45A | 537 | 317 | 1 | 73 | 12 |
ENSG00000172216 | CEBPB | 414 | 265 | 8 | 65 | 21 |