Skip to main content

Table 3 KEGG pathway classification of transcriptome (the top 10)

From: RNA-seq reveals differentially expressed genes of rice (Oryza sativa) spikelet in response to temperature interacting with nitrogen at meiosis stage

Number

Pathway

All genes with pathway annotation (31,242)

Pathway ID

1

Metabolic pathways

8,736 (27.96 %)

ko01100

2

RNA transport

4,026 (12.89 %)

ko03013

3

mRNA surveillance pathway

3,569 (11.42 %)

ko03015

4

Endocytosis

3,145 (10.07 %)

ko04144

5

Glycerophospholipid metabolism

3,115 (9.97 %)

ko00564

6

Biosynthesis of secondary metabolites

3,074 (9.84 %)

ko01110

7

Ether lipid metabolism

2,924 (9.36 %)

ko00565

8

Plant-pathogen interaction

1,760 (5.63 %)

ko04626

9

Spliceosome

1,405 (4.5 %)

ko03040

10

Plant hormone signal transduction

1,365 (4.37 %)

ko04075

  1. Note: The percentage of annotated unigenes in a pathway to the total number of unigenes is commented the small brackets
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us