Table 4 Summary of reads mapped to reference genes (de novo assembly of transcriptome)
Samples | Total reads | Total base pairs | mapped reads | Perfect match | <=2 bp Mismatch | Unique match | Multi-position match | Total unmapped reads |
|---|---|---|---|---|---|---|---|---|
ZHH-1 | 12,532,019 (100.00 %) | 614,068,931 (100.00 %) | 10,688,571 (85.29 %) | 9,100,428 (72.62 %) | 1,588,143 (12.67 %) | 9,065,210 (72.34 %) | 1,623,361 (12.95 %) | 1,843,448 (14.71 %) |
ZHH-2 | 11,933,716 (100.00 %) | 584,752,084 (100.00 %) | 10,130,167 (84.89 %) | 8,669,541 (72.65 %) | 1,460,626 (12.24 %) | 8,601,124 (72.07 %) | 1,529,043 (12.81 %) | 1,803,549 (15.11 %) |
ZHN-1 | 12,029,191 (100.00 %) | 589,430,359 (100.00 %) | 10,194,826 (84.75 %) | 8,731,597 (72.59 %) | 1,463,229 (12.16 %) | 8,703,059 (72.35 %) | 1,491,767 (12.40 %) | 1,834,365 (15.25 %) |
ZHN-2 | 12,381,854 (100.00 %) | 606,710,846 (100.00 %) | 10,448,097 (84.38 %) | 8,879,274 (71.71 %) | 1,568,823 (12.67 %) | 8,891,358 (71.81 %) | 1,556,739 (12.57 %) | 1,933,757 (15.62 %) |
ZNH-1 | 12,404,809 (100.00 %) | 607,835,641 (100.00 %) | 10,518,064 (84.79 %) | 9,018,788 (72.70 %) | 1,499,276 (12.09 %) | 8,850,183 (71.34 %) | 1,667,881 (13.45 %) | 1,886,745 (15.21 %) |
ZNH-2 | 12,057,086 (100.00 %) | 590,797,214 (100.00 %) | 10,235,897 (84.90 %) | 8,758,708 (72.64 %) | 1,477,189 (12.25 %) | 8,619,541 (71.49 %) | 1,616,356 (13.41 %) | 1,821,189 (15.10 %) |
ZNN-1 | 12,245,417 (100.00 %) | 600,025,433 (100.00 %) | 10,454,895 (85.38 %) | 8,914,987 (72.80 %) | 1,539,908 (12.58 %) | 8,797,125 (71.84 %) | 1,657,770 (13.54 %) | 1,790,522 (14.62 %) |
ZNN-2 | 11,936,315 (100.00 %) | 584,879,435 (100.00 %) | 10,150,654 (85.04 %) | 8,632,637 (72.32 %) | 1,518,017 (12.72 %) | 8,601,628 (72.06 %) | 1,549,026 (12.98 %) | 1,785,661 (14.96 %) |