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Table 4 Classification of S. pomifera CYPs according to their corresponding FPKM values produced by the RSEM software. The annotation of transcripts was kindly provided by Prof. David Nelson. All transcripts are full length unless otherwise stated; (cv) or (pv): complete or partial variant of the transcript

From: Combined metabolome and transcriptome profiling provides new insights into diterpene biosynthesis in S. pomifera glandular trichomes

S. pomifera transcript

Annotation

Clan

FPKM

Unigene29490

CYP76AH24 ortholog

CYP71

2026.30

CL5059.Contig1

CYP76AK6

CYP71

1892.16

Unigene22114

CYP71BE52

CYP71

1746.15

CL528.Contig2

CYP716A96 (cv1)

CYP85

1326.01

Unigene69

CYP86A92 ortholog

CYP86

868.07

Unigene2012

CYP71D455

CYP71

791.26

Unigene5951

CYP73A120 ortholog

CYP71

760.08

Unigene32156

CYP93B25 ortholog

CYP71

721.56

CL2814.Contig2

CYP77A27-28 hybrid

CYP71

566.95

Unigene11611

CYP716A97 partial

CYP85

451.34

Unigene33285

CYP94A49 ortholog partial

CYP86

328.35

Unigene29149

CYP71D456 partial

CYP71

264.95

Unigene24154

CYP76G16 ortholog

CYP71

204.79

CL1793.Contig2

CYP79D48

CYP71

188.15

CL2247.Contig3

CYP96A107 partial

CYP86

182.21

CL2814.Contig1

CYP77A28 ortholog

CYP71

171.95

CL2247.Contig1

CYP96A85.1

CYP71

154.99

CL5680.Contig2

CYP98A75 ortholog

CYP71

150.89

CL648.Contig4

CYP76AH26 (pv1)

CYP72

124.85

Unigene27048

CYP82AL1

CYP71

115.16

CL9797.Contig1

CYP72A401

CYP71

92.27

CL4391.Contig1

CYP79D49

CYP74

74.64

Unigene31529

CYP71AU53 ortholog

CYP71

66.61

CL4021.Contig1

CYP74B21 ortholog (cv1)

CYP71

61.60

Unigene10824

CYP736A169

CYP72

58.17

CL8816.Contig2

CYP92B28 ortholog

CYP85

57.09

Unigene24932

CYP714G14

CYP71

56.05

CL3375.Contig3

CYP728D17 ortholog (cv1)

CYP71

55.01

Unigene28763

CYP75B79 ortholog

CYP85

54.06

CL528.Contig1

CYP716A96 (pv2)

CYP71

52.8

CL3177.Contig1

CYP71A64 hybrid (pv1)

CYP71

45.13

Unigene22595

CYP716C12 ortholog

CYP71

44.40

Unigene389

CYP84A61 ortholog

CYP86

41.33

Unigene26013

CYP89A115 ortholog

CYP72

40.45

CL67.Contig1

CYP84A60 ortholog

CYP71

34.61

CL3177.Contig2

CYP71A64 hybrid (pv2)

CYP86

31.75

CL9546.Contig1

CYP94C54 ortholog

CYP51

29.89

Unigene32931

CYP72A395 ortholog

CYP71

28.49

CL2274.Contig2

CYP81Q43 ortholog (cv1)

CYP71

28.22

CL8694.Contig1

CYP704A98 ortholog partial

CYP71

20.77

CL2247.Contig2

CYP96A85.2

CYP72

20.69

CL8331.Contig1

CYP51G1 ortholog partial

CYP97

20.68

Unigene30171

CYP71AT90 ortholog

CYP71

20.04

CL4021.Contig2

CYP74B21 ortholog (pv2)

CYP71

19.61

CL3621.Contig2

CYP76AH25 partial

CYP86

19.39

CL8143.Contig2

CYP76A35 ortholog (pv1)

CYP86

18.07

Unigene1656

CYP82U4 ortholog

CYP71

16.82

Unigene29994

CYP749A50 partial

CYP97

16.71

CL3665.Contig1

CYP97A41 ortholog partial

CYP72

15.83

CL913.Contig1

CYP71CS1 (GenBank: KT157039)

CYP71

15.75

CL2521.Contig1

CYP71A63

CYP71

14.63

CL2494.Contig1

CYP704A99 ortholog

CYP71

14.34

CL2454.Contig1

CYP94A48 ortholog partial

CYP72

11.90

CL3408.Contig2

CYP71AU68 (pv1) (GenBank: KT157040)

CYP72

10.53

CL3375.Contig2

CYP728D17 ortholog (pv2)

CYP72

9.83

CL9797.Contig2

CYP72A326 ortholog (pv1)

CYP71

9.69

CL4235.Contig2

CYP81B62 ortholog (pv1)

CYP85

9.68

Unigene29321

CYP97B34 ortholog

CYP71

9.04

CL2274.Contig1

CYP81Q43 ortholog (pv2)

CYP71

8.92

CL3449.Contig2

CYP714P1 (pv1)

CYP71

8.11

CL5917.Contig1

CYP81B77

CYP85

7.24

CL4235.Contig3

CYP81B62 ortholog (cv2)

CYP86

6.95

CL5645.Contig2

CYP76B64 (pv1)

CYP71

6.07

CL5645.Contig1

CYP76B64 (pv2)

CYP71

5.65

CL8094.Contig1

CYP72A400

CYP71

4.76

CL3449.Contig1

CYP714P1 (pv2)

CYP71

4.35

CL3408.Contig1

CYP71AU68 (pv2)

CYP85

3.26

CL2016.Contig4

CYP72A393 ortholog (pv1)

CYP86

3.23

CL3361.Contig1

CYP749A49 partial

CYP71

3.17

CL648.Contig3

CYP76AH26 (pv2)

CYP71

2.99

CL2016.Contig3

CYP72A393 ortholog (pv2)

CYP71

1.85

CL8143.Contig1

CYP76A35 ortholog (cv2) (GenBank: KT157043)

CYP86

1.71

CL9797.Contig3

CYP72A326 ortholog (pv2)

CYP71

1.51

CL908.Contig1

CYP707A102 ortholog partial

CYP71

0.79

CL3449.Contig3

CYP714P1 (pv3)

CYP72

0.02

CL648.Contig1

CYP76AH26 (pv3)

CYP71

0.00

CL648.Contig2

CYP76AH26 (pv4)

CYP71

0.00

Unigene34025

CYP76AH26 (pv5)

CYP71

0.00

Unigene34026

CYP76AH26 (pv6)

CYP71

0.00

Unigene34027

CYP76AH26 (pv7)

CYP71

0.00

Unigene34028

CYP76AH26 (pv8)

CYP71

0.00