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Table 3 Summary of identified C-to-U RNA editing sites. Values shown in parentheses indicate the number of RNA editing sites after excluding duplicate genes. Editing frequency values were calculated after excluding duplicates. UTRs and IGSs were defined/distinguished based on an arbitrary cutoff of 2 kb from annotated coding sequences

From: High transcript abundance, RNA editing, and small RNAs in intergenic regions within the massive mitochondrial genome of the angiosperm Silene noctiflora

 

Editing sites

Mean editing frequency (%)

Protein-Coding

228 (182)

91.1

 Synonymous

23 (17)

60.6

 Nonsynonymous

205 (165)

94.2

Pseudogene

30 (24)

85.7

Intron

14 (12)

59.8

UTR

36 (32)

54.7

IGS

29 (29)

62.3

Total

337 (279)

82.1