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Table 8 Top 20 of upregulated contigs in the acaricide resistant P. ulmi PSR-TK strain relative to the susceptible HS strain. See Additional file 17 for a full list of differentially expressed contigs

From: Transcriptome profiling of a spirodiclofen susceptible and resistant strain of the European red mite Panonychus ulmi using strand-specific RNA-seq

Contig IDa log2FC Blast2GO description T. urticae BLASTx hit (E-value)b T. urticae gene name
Contig_00184 6,06 RNA polymerase - -
Contig_01016 5,13 cytochrome family tetur26g01470 (0) cytochrome P450 monooxygenase (CYP385C1)
Contig_19626 5,06 acetylcholinesterase tetur35g00210 (3,00E−171) Carboxylcholinesterases (TuCCE66)
Contig_08154 3,61 farnesoic acid o-methyl transferase-like protein tetur30g00770 (3,00E−64) farnesoic acid O-methyltransferase-like
Contig_00577 3,59 acetylcholinesterase tetur01g16180 (0) Carboxylcholinesterases (TuCCE13)
Contig_14289 3,52 - tetur30g01870 (7,00E−17) hypothetical protein
Contig_09906 3,51 collagen alpha-4 chain tetur38g00240 (1,00E−23) collagen alpha-2
Contig_21107 3,47 acetyl- partial tetur21g02170 (2E−22) ACCase
Contig_01487 3,51 cathepsin partial tetur25g00650 (2,00E−95) cathepsin L
Contig_14168 3,47 adenylyl cyclase associated protein tetur14g00690 (2E−30) adenylate cyclase-associated CAP
Contig_00198 3,36 polyprotein - -
Contig_08809 3,34 RNA polymerase 1 tetur02g08750 (3,00E−09) RNA-directed RNA polymerase 1
Contig_04691 3,28 polyprotein - -
Contig_06838 3,27 glucosylceramidase isoform 2 tetur02g12930 (0) glycoside hydrolase
Contig_26919 3,27 intermediate in toll signal transduction tetur03g05570 (2,00E−27) evolutionarily conserved signaling intermediate in Toll pathway
Contig_26878 3,17 chimeric r1 r2 retrotransposon tetur04g02090 (2,00E−26) similar to gag-like protein
Contig_12550 3,10 collagen alpha-1 tetur01g04240 (3,00E−18) collagen alpha-1
Contig_12959 3,07 n/a tetur03g05210 (2,00E−17) U6 snRNA phosphodiesterase isoform X1 putative
Contig_16990 3,03 leucine-rich repeat tetur14g01680 (0) similar to leucine-rich transmembrane protein
Contig_25316 3,00 RNA polymerase 2-like tetur02g08750 (2,00E−15) RNA-directed RNA polymerase 1
  1. acontigs indicated in bold have their best BLASTx hit with biRNA viruses while contigs indicated in italic contain a gene of which the upregulation is the result of spirodiclofen selection
  2. bE-value threshold was set at 1E−5
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