Genome-wide analysis of Fusarium graminearum field populations reveals hotspots of recombination

Talas, Firas; McDonald, Bruce A.

doi:10.1186/s12864-015-2166-0

BMC Genomics

Table 2 Recombination and selection parameters measured in each Fg ss field population organized according to chromosome

From: Genome-wide analysis of Fusarium graminearum field populations reveals hotspots of recombination

Population	Chr.	S^a	Tajima’D	Corr. (r ², d)^b	2N_er (10⁻⁵)^c	I_A ^d	P value (I_A)	r_d ^e	P value (r_d)	Bonferroni adj.
Hoh1	1	264	−1.35	0.00	0.83	1.61	0.00	0.03	0.001	***^f
Hoh2	1	146	−1.02	−0.02	0.76	1.81	0.01	0.05	0.007
PLN	1	197	−1.31	−0.01	5.10	0.30	0.13	0.01	0.129
BIR	1	190	−1.46	0.01	2.03	0.57	0.03	0.01	0.026
TUB	1	56	−1.13	0.00	1.05	1.30	0.00	0.02	0.003
NUF	1	199	−1.06	0.01	1.17	1.47	0.00	0.04	0.003
ENT	1	161	−1.11	−0.01	2.34	1.14	0.02	0.03	0.017
HER	1	152	−0.74	−0.01	1.31	3.00	0.00	0.08	0.001	***
BOL	1	230	−1.30	0.00	0.46	1.96	0.00	0.04	0.001	***
KEL	1	109	−0.88	−0.02	5.29	−0.24	0.66	−0.01	0.663
SCHICK	1	130	−1.39	0.11	1.46	1.73	0.00	0.03	0.001	***
WET1	1	135	−1.39	0.00	0.71	1.60	0.00	0.03	0.001	***
WET2	1	199	−1.22	0.01	7.28	0.50	0.03	0.01	0.032
Hoh1	2	148	−1.29	0.01	0.68	1.15	0.00	0.03	0.001	***
Hoh2	2	88	−1.12	0.02	0.57	1.16	0.03	0.06	0.028
PLN	2	101	−1.34	0.01	1.45	−0.46	0.97	−0.02	0.966
BIR	2	95	−1.10	−0.01	2.42	−0.14	0.70	−0.01	0.703
TUB	2	37	−1.16	−0.01	1.15	0.81	0.02	0.02	0.017
NUF	2	105	−1.08	−0.04	0.72	2.33	0.00	0.11	0.001	***
ENT	2	82	−1.19	−0.02	2.83	1.73	0.00	0.08	0.002
HER	2	73	−0.96	0.01	2.41	0.67	0.15	0.04	0.15
BOL	2	129	−1.32	0.00	1.01	1.07	0.00	0.04	0.003
KEL	2	43	−1.05	0.05	1.59	−0.17	0.63	−0.03	0.634
SCHICK	2	54	−1.38	−0.11	1.39	1.02	0.01	0.03	0.007
WET1	2	81	−1.43	0.00	0.95	0.37	0.10	0.01	0.101
WET2	2	105	−1.22	−0.02	1.17	0.14	0.27	0.01	0.266
Hoh1	3	166	−1.45	−0.02	0.78	1.24	0.00	0.03	0.001	***
Hoh2	3	80	−0.98	−0.03	0.29	2.97	0.00	0.14	0.001	***
PLN	3	113	−1.13	−0.02	1.60	0.29	0.14	0.01	0.139
BIR	3	113	−1.47	−0.02	1.72	−0.17	0.78	−0.01	0.781
TUB	3	49	−1.21	0.01	2.49	0.13	0.50	0.00	0.501
NUF	3	139	−1.06	0.00	1.10	0.74	0.05	0.02	0.045
ENT	3	103	−1.31	0.00	0.99	0.91	0.02	0.05	0.024
HER	3	82	−0.86	−0.02	1.19	1.20	0.04	0.06	0.042
BOL	3	160	−1.34	0.00	0.94	1.81	0.00	0.05	0.001	***
KEL	3	65	−1.01	0.01	3.43	1.71	0.02	0.14	0.015
SCHICK	3	85	−1.31	0.00	1.87	0.81	0.02	0.02	0.022
WET1	3	92	−1.47	−0.01	1.23	1.71	0.00	0.04	0.001	***
WET2	3	118	−1.25	−0.01	3.86	0.33	0.09	0.01	0.089
Hoh1	4	227	−1.09	−0.09	1.60	1.80	0.00	0.05	0.001	***
Hoh2	4	126	−1.05	−0.11	2.41	3.19	0.00	0.25	0.001	***
PLN	4	164	−0.87	−0.12	1.29	0.87	0.02	0.04	0.015
BIR	4	189	−0.86	−0.09	2.82	0.33	0.10	0.01	0.095
TUB	4	95	−0.18	−0.08	2.37	0.81	0.02	0.02	0.015
NUF	4	184	−0.74	−0.07	2.50	0.71	0.06	0.02	0.059
ENT	4	143	−0.50	−0.11	2.68	0.07	0.38	0.00	0.379
HER	4	124	−0.41	−0.14	2.17	1.10	0.03	0.07	0.026
BOL	4	191	−0.75	−0.01	1.61	0.79	0.01	0.03	0.013
KEL	4	95	−0.05	−0.11	2.78	−0.34	0.79	−0.06	0.794
SCHICK	4	106	−0.49	0.10	1.13	1.24	0.00	0.03	0.001	***
WET1	4	153	−0.69	−0.07	2.81	0.38	0.11	0.01	0.112
WET2	4	171	−0.98	−0.08	3.55	0.42	0.07	0.02	0.066

^aNumber of polymorphic (segregating) sites
^bCorrelation between LD (r ²) and physical distance (d)
^cChromosome-wide population recombination rate (crossovers/bp/generation)
^dIndex of association
^eAdjusted value of I_A
^fSignificant after Bonferroni correction at P (I_A) < 0.001

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com