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Fig. 2 | BMC Genomics

Fig. 2

From: Genome-wide mapping of Hif-1α binding sites in zebrafish

Fig. 2

The primary motif found in vhl mutant ChIP-peaks. The most significant 1000 peaks from the sequencing of the vhl mutant ChIP material were analysed for the presence of sequence motifs in the 100 bp surrounding the centre of the peak using MEME. This identified a motif that closely resembles the known HRE consensus [41]. The y-axis shows the Relative Entropy in bits, a measure of the probability that the letter will be found at that position relative to the total information content of the stack, the x-axis shows the width of the motif in base pairs. More information can be found on the MEME website (

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