Combining powers of linkage and association mapping for precise dissection of QTL controlling resistance to gray leaf spot disease in maize (Zea mays L.)

Table 5 List of SNP markers associated with GLS resistance and informative in marker-assisted selection

QTL Name	SNP marker name	Sequence with the source of variation^a	MAF^b	Physical position
QTLGLSchr1	PZE-101188909	TTCAGGGTGCTGATTTATTTTTCCGGGCAGTAATCTCGAACATGGAAAAG[A/G]TTTATTTGAGCAGGAATCCTACAGCCAAAACCATTCTGGAGCTTGTACGA	0.23	234,309,200
QTLGLSchr6	none
QTLGLSchr8a	PZE-108022834	CGCCGATGGATGGATAGACAGCAAATTCCGGTGAGCACATCGATCCGTTT[T/C]ATTCCATGCGCCGATCGATGCATATAGGTGCATGAAAACTTAATTACTCA	0.26	21,810,604
QTLGLSchr8b	PZE-108050268	AAAGCCAGCATACCAGTAGCACTAGTGAGTTAACCCCCCTGAAATTCTGC[A/T]GCAGCAGCAGTCTGGATCGCAGTCACCATGTCACCAGCCACCAGGGCATC	0.09	87,682,262

^aContext sequence from which Infinium assay was designed. Single nucleotide polymorphism is shown in square brackets with putative GLS resistance allele underlined and bolded. Oligos for Infinium assay design were not included as they would always be de novo designed for any new order
^bMinor allele frequency

ISSN: 1471-2164