Fig. 2
From: Variant mapping and mutation discovery in inbred mice using next-generation sequencing
Visualization of homozygosity mapping in 2 independent mouse lines. The upper panels show homozygosity mapping using WGS data and lower panels using WES data (simulated from WGS in K416). For each line the genome was divided in 20 Mb sliding windows with a 1 Mb overlap, and three values were calculated per window; the average non-reference allele frequency for all SNPs (average naf), a count of the number of homozygote SNPs (hom count), and the percentage of SNPs that were classed as homozygote (hom percentage)