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Table 1 Proportion of homogeneity (purity) for 80 samples from 16 inbred lines using 191 KASP and 257,268 GBS markers

From: Comparison of Kompetitive Allele Specific PCR (KASP) and genotyping by sequencing (GBS) for quality control analysis in maize

No Name Seed class Source Homogeneity (%)
KASP GBS
1 SC22_AR Basic AgriCEFT 65 79
2 SC22_AR09 Pre-basic AARC 59 76
3 SC22_BARC2011k Basic BARC 66 80
4 SC22_BARC2012k Basic BARC 69 81
5 SC22_EB Nucleolus BNMR 79 86
6 SC22_GB Gene bank Gene Bank 73 82
7 SC22_HD04/05 Pre-basic HARC 63 79
8 SC22_I11B Pre-basic BNMR 67 81
9 SC22_I12B Pre-basic BNMR 64 80
10 124-b(113)_AR09 Pre-basic AARC 88 88
11 124-b(113)_ASE Basic ASE 76 83
12 124-b(113)_BARC2010k Basic BARC 82 85
13 124-b(113)_BARC2011k Basic BARC 84 85
14 124-b(113)_EB Nucleolus BNMR 88 89
15 124-b(113)_GB Gene bank Gene Bank 89 89
16 124-b(113)_HD Pre-basic HARC 75 82
17 124-b(113)_HD04/05 Pre-basic HARC 69 80
18 124-b(113)_I12K pre-basic BNMR 83 85
19 124-b(109)_EB Nucleolus BNMR 68 81
20 124-b(109)_HD04/05 Pre-basic HARC 58 74
21 124-b(109)_I11B Pre-basic BNMR 59 74
22 124-b(109)_I13B Pre-basic BNMR 56 74
23 CML197 CIMMYT CIMMYT 91 100
24 CML197_EB Nucleolus BNMR 73 85
25 CML197_HD03/04 Pre-basic HARC 69 84
26 CML197_I10K Pre-basic BNMR 69 84
27 CML197_I11K Pre-basic BNMR 72 85
28 CML197_I12K Pre-basic BNMR 67 85
29 CML312 CIMMYT CIMMYT 100 100
30 CML312_EB Nucleolus BNMR 99 100
31 A7033_AR02/03E.C Pre-basic AgriCEFT 61 79
32 A7033_AR08 Pre-basic AARC 63 80
33 A7033_EB Nucleolus BNMR 75 85
34 A7033_GB Gene bank Gene Bank 76 84
35 A7033_HD Pre-basic HARC 61 82
36 A7033_I10K Pre-basic BNMR 62 80
37 A7033_I11K Pre-basic BNMR 65 81
38 A7033_selected Breeder seed BNMR 70 84
39 F7215_AR02/03E.C Pre-basic AgriCEFT 63 77
40 F7215_AR08 Pre-basic AARC 69 78
41 F7215_EB Nucleolus BNMR 77 82
42 F7215_GB Gene bank Gene Bank 64 78
43 F7215_HD04/05 Pre-basic HARC 67 77
44 F7215_I11K Pre-basic BNMR 65 77
45 F7215_I12K Pre-basic BNMR 67 78
46 F7215_selected breeder seed BNMR 70 80
47 142-1-e_AR02/03E.C Basic AgriCEFT 82 83
48 142-1-e_EB Nucleolus BNMR 89 86
49 142-1-e_GB Gene bank Gene Bank 89 87
50 142-1-e_I10K Pre-basic BNMR 85 85
51 142-1-e_I12K Pre-basic BNMR 87 84
52 CML202 CIMMYT CIMMYT 99 100
53 CML202_12K Pre-basic BNMR 99 99
54 CML202_EB Nucleolus BNMR 99 99
55 CML202_HD04/05 Pre-basic HARC 96 99
56 CML202_I11K pre-basic BNMR 92 98
57 CML395 CIMMYT CIMMYT 100 100
58 CML395_12K Pre-basic BNMR 64 81
59 CML395_EB Nucleolus BNMR 49 77
60 CML395_HD Pre-basic HARC 60 81
61 CML395_I11K Pre-basic BNMR 59 81
62 144-7-b_I08K Pre-basic BNMR 80 84
63 144-7-b_I09k Pre-basic BNMR 79 83
64 144-7-b_I10k Pre-basic BNMR 81 84
65 CML144 CIMMYT CIMMYT 99 100
66 CML144_EB Nucleus BNMR 98 99
67 CML144_I11B Pre-basic BNMR 98 98
68 CML144_I13B Pre-basic BNMR 96 97
69 CML159_EB Nucleolus BNMR 98 99
70 CML159_I09K Pre-basic BNMR 93 97
71 CML159_I13B Pre-basic BNMR 90 96
72 CML176_EB Nucleolus BNMR 87 94
73 CML176_I12K Pre-basic BNMR 83 94
74 CML161 CIMMYT CIMMYT 100 100
75 CML161_I12B Pre-basic BNMR 99 100
76 CML161_I13B Pre-basic BNMR 100 100
77 CML165 CIMMYT CIMMYT 98 100
78 CML165_EB Nucleolus BNMR 95 98
79 CML165_I11B Pre-basic BNMR 98 99
80 CML165_I12B Pre-basic BNMR 88 93