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Fig. 3 | BMC Genomics

Fig. 3

From: Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon

Fig. 3

Kryze potential genome copy containing an ORF1 homologous to AVRk1 containing a cysteine-rich NB domain (PF00098.16_zf-CCHC_GAG) and a putative ORF2p with RT (PFAM: PF00078.20) and RH (PFAM: PF00075.17) domains. a Blgr_v3_contig_001018.fa:18231..24230 bp corresponding to Bgh_RIX_G4472 full-length copy with 3000 bp downstream region. AVRK1 alignment (in red) and domains annotated by PASTEC classifier (green) are represented. b Blue lines represent the two TE genomic copies mapped in the context of all the copies (brown lines) plotted to the reference TE consensus sequences Bgh_RIX_G4472 and Bgh_RIX_G5646

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