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Table 3 Number of sequences per group (non-redundant sequences between parenthesis) and mean identity percentage in each group for full length ORF1 and truncated sequences homologous to AVRK1 or AVRA10.

From: Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon

  Full length ORF1 sequences Truncated sequences before NB domain (putative AVR/effectors)
Number of sequences Mean identitya Number of sequences Mean identitya
AVRK1-like 30 (28) 69.3 % 135 (135) 57.0 %
AVRA10-like 32 (32) 59.9 % 69 (68) 55.2 %
Similar to both
AVRK1/AVRA10
61(60) 58.3 % 90 (90) 49.2 %
Total 123 (120)   294 (293)  
  1. aMean identity percentage in each group is based on translated full-length ORF calculated by using the pairwise identity after realigning each pair of sequences and averaging it out for all sequences in the group.