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Table 3 Number of sequences per group (non-redundant sequences between parenthesis) and mean identity percentage in each group for full length ORF1 and truncated sequences homologous to AVRK1 or AVRA10.

From: Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon

 

Full length ORF1 sequences

Truncated sequences before NB domain (putative AVR/effectors)

Number of sequences

Mean identitya

Number of sequences

Mean identitya

AVRK1-like

30 (28)

69.3 %

135 (135)

57.0 %

AVRA10-like

32 (32)

59.9 %

69 (68)

55.2 %

Similar to both

AVRK1/AVRA10

61(60)

58.3 %

90 (90)

49.2 %

Total

123 (120)

 

294 (293)

 
  1. aMean identity percentage in each group is based on translated full-length ORF calculated by using the pairwise identity after realigning each pair of sequences and averaging it out for all sequences in the group.