Table 4 Properties of hrpG-regulated genes in X. campestris pv raphani strain CFBP 5828R grown in MOKA medium

3860

xopR

14

Xanthomonas outer protein R

yes

13

5760

xopAR

220

Xanthomonas outer protein AR

-

12

17460

xopAC

127

Xanthomonas outer protein AC

-

12

19470

avrXccA2

34

AvrXccA2

-

7

30660

-

16

hypothetical protein

-

12

30670

-

53

hypothetical protein

-

12

30680

-

8

hypothetical protein

-

12

30720

bgl1

6

beta-glucosidase

-

12

30730

-

473

ncRNA

yes

13

30740

-

80

hypothetical protein

-

13

30750

xopP

68

Xanthomonas outer protein P

yes

13

30760

-

6

ncRNA

-

13

30770

xopAL1

359

Xanthomonas outer protein AL1

yes

13

30780

-

221

hypothetical protein

(+)

8

30790

-

298

hypothetical protein

(+)

13

30800

-

222

hypothetical protein

(+)

13

30810

-

60

hypothetical protein

(+)

11

30820

-

66

hypothetical protein

(+)

13

30840

hpa2

885

type III secretion-system related transglycosylase

yes

13

30850

hpa1/xopA

504

Hpa1, Xanthomonas outer protein A

yes

13

30860

hrcC

81

HrcC protein

-

13

30870

hrcT

142

HrcT protein

(+)

13

30880

hrpB7

67

HrpB7 protein

(+)

13

30890

hrcN

129

type III secretion system ATPase

(+)

13

30900

-

217

type III secretion system protein HrpB

(+)

13

30910

hrpB4

168

type III secretion system protein

(+)

13

30920

hrcJ

218

HrcJ protein

(+)

13

30930

hrpB2

303

HrpB2 protein

(+)

13

30940

hrpB1

307

HrpB1 protein

yes

13

30950

hrcU

113

type III secretion system protein HrcU

yes

13

30960

hrcV

63

type III secretory pathway component

(+)

13

30970

hpaC

116

HpaC protein

(+)

13

30980

hrcQ

133

HrcQ protein

yes

13

30990

-

208

type III secretion system protein

(+)

13

31000

-

147

hypothetical protein

(+)

13

31010

hpaA

173

HpaA protein

(+)

13

31020

hrcD

356

HrcD protein

yes

13

31030

hrpD6

304

HrpD6 protein

(+)

13

31040

hrpE

345

type III secretion system pilus protein

(+)

13

31050

hpaB

454

type III secretion system export control protein

(+)

13

31060

hrpW

128

glycosylhydrolase-like type III secretion system protein

(+)

13

31070

xopF1

70

hypothetical protein = XopF1

(+)

13

31080

hpa3

148

Hpa3 protein, type III secretion system

yes

5

31090

-

32

yes

3

31100

-

12

ncRNA

-

3

31110

-

79

AutoIPR: IPR008490:Transposase InsH, N-terminal;

(+)

3

31120

-

14

ncRNA

(+)

3

31130

xopAT

11

Xanthomonas outer protein AT

yes

3

31140

xopAD

25

Shikimate kinase, Xanthomonas outer protein AD

-

5

31160

-

34

-

5

31170

hrpF

66

type III secretion system host membrane insertion protein

-

13

31180

-

7

-

10

31690

hrpX

35

AraC family transcriptional regulator = hrpX

-

13

31720

hrpG

89

transcriptional regulator HrpG

-

13

31730

-

7

ncRNA

-

13

42660

xopL

45

Xanthomonas outer protein L

yes

9

430

-

10

methyltransferase

yes

13

1770

dctP

6

dicarboxylate transport system, periplasmic substate binding component

-

13

1780

dctQ

6

dicarboxylate transport system, small permease component

-

13

1790

dctM

6

dicarboxylate transport system, large permease component

-

13

1800

xylB3

6

xylan 1,4-beta-xylosidase/alpha-N-arabinofuranosidase

-

13

4520

-

20

transcrictional regulator, MarR family

-

13

4530

-

20

hypothetical protein

-

11

4540

-

15

hypothetical protein

-

12

4550

tsr2

9

membrane-anchored chemotaxis sensory transducer

-

12

4870

pcaK

30

4-hydroxybenzoate/protocatachuate MFS transporter

-

13

4880

-

6

hypothetical protein

-

13

5010

-

8

oxygenase subunit

-

13

5020

-

12

oxygenase subunit

-

13

5530

-

13

hypothetical protein

-

13

5540

-

18

-

13

5660

virK

32

hypothetical protein

-

13

5770

-

49

-

12

5790

-

44

AutoIPR: IPR008490:Transposase InsH, N-terminal;

-

1

5800

-

43

-

11

5810

-

33

-

11

6120

-

8

hypothetical protein

-

13

8610

pglA1

90

polygalacturonase

yes

13

9460

celS2

10

cellulase/xyloglucan hydrolase

yes

10

9760

-

28

hypothetical protein

-

8

9930

leuC

8

isopropylmalate isomerase large subunit

-

13

9940

leuD

9

isopropylmalate isomerase small subunit

-

13

9950

ubiE2

8

ubiquinone/menaquinone biosynthesis methyltransferase

-

13

9960

leuB

8

3-isopropylmalate dehydrogenase

-

13

11650

-

20

-

1

12120

-

13

hypothetical protein

-

3

12940

-

55

hypothetical protein

-

13

13330

-

59

hypothetical protein

-

13

13340

-

431

-

13

13350

-

188

hypothetical protein

-

10

13360

-

450

hypothetical protein

-

13

13400

-

24

secreted lipase

yes

13

14380

-

7

ncRNA

-

13

14820

-

0,11

Endoproteinase Arg-C (C-terminal fragment)

-

13

16210

-

9

cysteine protease

yes

7

16450

-

8

serine endopeptidase

-

13

16460

-

19

hypothetical protein

-

13

16470

-

99

serine endopeptidase

-

13

16480

-

41

ncRNA

-

13

17350

-

56

Metallopeptidase

-

13

19460

-

29

peptidase

-

13

19650

-

14

hypothetical protein

-

13

20940

pglA2

14

polygalacturonase

yes

13

20950

-

30

putative pectate lyase

(+)

1

20960

-

54

putative Serine/cysteine peptidase protein

yes

1

20970

-

10

AutoIPR: IPR000070:Pectinesterase, catalytic; IPR011050:Pectin lyase fold/virulence factor;

-

1

23600

-

8

hypothetical protein

-

13

23610

-

116

Metallopeptidase

-

13

26170

-

31

TonB-dependent outer membrane receptor precursor

yes

13

26550

-

46

MFS glucose importer

-

13

26750

-

16

hypothetical protein

-

13

26760

rpoE4

8

RNA polymerase ECF-type sigma factor

-

13

26770

-

7

hypothetical protein

-

13

26780

-

8

Subtilase family serine protease

-

13

26790

-

7

ABC transporter heme permease CcmC

-

13

26810

-

6

cytochrome c-type biogenesis protein CcmE

-

13

26820

-

6

C-type cytochrome biogenesis membrane protein CcmF

-

13

26830

-

8

Thiol:disulfide interchange protein (c-type cytochrome biogenesis protein CcmG)

-

13

26840

-

5

Formate-dependent nitrite reductase complex nrfFG subunit precursor.

-

13

27610

-

15

hypothetical protein

-

13

28890

cah2

9

carbonate dehydratase

-

13

28970

-

21

transcriptional regulator, MarR family

-

13

29010

-

6

hypothetical protein

-

13

29100

-

0,16

Major facilitator superfamily protein

-

13

29120

oprN5

0,14

outer membrane efflux protein

-

13

29130

-

0,19

transcriptional regulator, MarR family

-

13

29740

-

7

TonB-dependent outer membrane receptor precursor

-

13

32520

-

56

hypothetical protein

-

13

32540

-

53

ncRNA

-

13

33090

-

9

hypothetical protein

-

13

33100

-

11

hypothetical protein

-

13

35670

-

13

transcriptional regulator, LysR family

(+)

13

35680

ligA

34

protocatechuate 4,5-dioxygenase subunit alpha

(+)

13

35690

ligB

54

protocatechuate 4,5-dioxygenase subunit beta

yes

13

37110

-

0,11

hypothetical protein

-

13

37120

-

0,18

hypothetical protein

-

13

37610

pel3

0,14

pectate lyase

-

13

40980

-

30

disulfide-isomerase

-

13

42070

-

34

Acid phosphatase precursor

-

13

42650

-

7

integrase

-

12

45310

-

20

hypothetical protein

-

12