Skip to main content

Table 2 Assembly statisitics and features of the Lysobacter genome sequences

From: Comparative genomics and metabolic profiling of the genus Lysobacter

  L. ant ATCC29479 L. ant 76 L. ant 13-6 a L. cap 55 L. cap AZ78 a L. gum 3.2.11 L. enz C3
Sequencing platform HiSeq 2000 PacBio P5C3 HiSeq 2500 PacBio P5C3 Illumina GAIIx PacBio P5C3 HiSeq 2000
Asssembly statistics        
Genome size (Mb) 5.77 5.91 5.53 6.39 6.32 6.06 6.16
# scaffolds 1 1 - 1 - 1 1
# contigs 1 1 168 1 142 1 1
Number of Reads - 106 778 11 524 134 114 536 7 512 266 112 495 -
N50 Read Length - 15 230 60 432 14 389 139 986 14 221 -
Mean Read Length - 11 242 - 10 633 - 10 363 -
GC% 67.0 66.8 67.1 66.6 66.4 66.5 69.8
Genomic features        
Coding DNA sequences (CDSs) 5178 5143 4056 5685 5448 5322 5547
# hypothetical proteins 1338 1832 - 2123 - 1845 2088
rRNA number 9 6 - 6 7 6 6
tRNA number 55 51 - 52 85 51 60
  1. a These genomes are publically available and consisting of multiple contigs. Statistics were taken from [4, 5]. - indicates unknown.