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Table 2 The number of overlapped variants between reference panels and genotype panels

From: A new strategy for enhancing imputation quality of rare variants from next-generation sequencing data via combining SNP and exome chip data

Reference panels Exome chip SNP chip Combined
WES 21,120 4,472 24,514
WES + EXOME 38,243 7,323 41,637
WES + GWAS 23,972 344,359 364,402
WES + GWAS + EXOME 38,243 344,359 378,695
1KG 49,286 344,359 389,715