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Table 2 The number of overlapped variants between reference panels and genotype panels

From: A new strategy for enhancing imputation quality of rare variants from next-generation sequencing data via combining SNP and exome chip data

Reference panels

Exome chip

SNP chip

Combined

WES

21,120

4,472

24,514

WES + EXOME

38,243

7,323

41,637

WES + GWAS

23,972

344,359

364,402

WES + GWAS + EXOME

38,243

344,359

378,695

1KG

49,286

344,359

389,715