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Table 1 Composition of synthetic communities with biological classification of the organisms as well as the proportions used for UM community in this study

From: A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

ID

Genome name

Genome size (bp)

Domain

Phylum

Class

Proportion UM community (%)

ACI_CAP

Acidobacterium capsulatum ATCC 51196

4127356

Bacteria

Acidobacteria

Acidobacteriae

8.1

AKK_MUC

Akkermansia muciniphila ATCC BAA-835

2664102

Bacteria

Verrucomicrobia

Verrucomicrobiae

0.9

ANE_THE

Anaerocellum thermophilum Z-1320, DSM 6725

2919718

Bacteria

Firmicutes

Clostridia

1.2

BAC_THE

Bacteroides thetaiotamicron VPI-5482

6293399

Bacteria

Bacteroidetes

Bacteroidia

0.2

BAC_VUL

Bacteroides vulgatus ATCC 8482

5163189

Bacteria

Bacteroidetes

Bacteroidia

0.9

BOR_BRO

Bordetella bronchiseptica RB50

5339179

Bacteria

Proteobacteria

Betaproteobacteria

9.2

BUR_XEN

Burkholderia xenovorans LB400

973113

Bacteria

Proteobacteria

Betaproteobacteria

2.6

CAL_SAC

Caldicellulosiruptor saccharolyticus DSM 8903

2970275

Bacteria

Firmicutes

Clostridia

2

CHL_TEP

Chlorobaculum tepidum TLS

2154946

Bacteria

Chlorobi

Chlorobia

0.5

CHL_LIM

Chlorobium limicola DSM 245

2763181

Bacteria

Chlorobi

Chlorobia

0.4

CHL_PHA226

Chlorobium phaeobacteroides DSM 266

3133902

Bacteria

Chlorobi

Chlorobia

1.9

CHL_PHA265

Chlorobium phaeovibrioides DSM 265

1966858

Bacteria

Chlorobi

Chlorobia

0.3

CHL_AUR

Chloroflexus aurantiacus J-10-fl

5258541

Bacteria

Chloroflexi

Chloroflexi

0.9

CLO_THE

Clostridium thermocellum ATCC 27405

3843301

Bacteria

Firmicutes

Clostridia

0.6

DEI_RAD

Deinococcus radiodurans R1

3284156

Bacteria

Thermi

Deinococci

1.7

DES_DES

Desulfovibriodesulfuricans ATCC 27774

2873437

Bacteria

Proteobacteria

Deltaproteobacteria

1.4

DES_PIG

Desulfovibrio piger ATCC 29098

2826240

Bacteria

Proteobacteria

Deltaproteobacteria

3.1

DIC_TUR

Dictyoglomus turgidum DSM 6724

1855560

Bacteria

Dictyoglomi

Dictyoglomia

3.5

ENT_FAE

Enterococcus faecalis V583

3359974

Bacteria

Firmicutes

Bacilli

4.3

FUS_NUC

Fusobacterium nucleatum ATCC 25586

2174500

Bacteria

Fusobacteria

Fusobacteria

0.3

GEM_AUR

Gemmatimonas aurantiaca T-27T

4636964

Bacteria

Gemmatimonadetes

Gemmatimonadetes

0.7

HER_AUR

Herpetosiphon aurantiacus ATCC 23779

6785430

Bacteria

Chloroflexi

Chloroflexi

1.8

HYD_Y04AAS1

Hydrogenobaculum sp. Y04AAS1

1559514

Bacteria

Aquificae

Aquificae

1.1

LEP_CHO

Leptothrix cholodnii SP-6

4909403

Bacteria

Proteobacteria

Betaproteobacteria

1.8

NIT_EUR

Nitrosomonas europaea ATCC 19718

2812094

Bacteria

Proteobacteria

Betaproteobacteria

4.3

NOS_PCC7120

Nostoc sp. PCC 7120

7211789

Bacteria

Cyanobacteria

unclassified

2.7

PEL_PHA

Pelodictyon phaeoclathratiforme BU-1

3018238

Bacteria

Chlorobi

Chlorobia

0.1

PER_MAR

Persephonella marina EX-H1

2467104

Bacteria

Aquificae

Aquificae

5.5

POR_GIN

Porphyromonas gingivalis ATCC 33277

2354886

Bacteria

Bacteroidetes

Bacteroidia

0.2

RHO_BAL

Rhodopirellula baltica SH 1

7145576

Bacteria

Planctomycetes

Planctomycetacia

1

RHO_RUB

Rhodospirillum rubrum ATCC 11170

4406557

Bacteria

Proteobacteria

Alphaproteobacteria

1.2

RUE_POM

Ruegeria pomeroyi DSS-3

4601053

Bacteria

Proteobacteria

Alphaproteobacteria

0.6

SAL_ARE

Salinispora arenicola CNS-205

5786361

Bacteria

Actinobacteria

Actinobacteria

0.5

SAL_TRO

Salinispora tropica CNB-440

5183331

Bacteria

Actinobacteria

Actinobacteria

1.6

SHE_BAL_OS185

Shewanella baltica OS185

5312910

Bacteria

Proteobacteria

Gammaproteobacteria

3.1

SHE_BAL_OS223

Shewanella baltica OS223

5358884

Bacteria

Proteobacteria

Gammaproteobacteria

1.4

SUL_EE.36

Sulfitobacter sp. EE-36

3547243

Bacteria

Proteobacteria

Alphaproteobacteria

2

SUL_NAS.14.1

Sulfitobacter sp. NAS-14.1

4002069

Bacteria

Proteobacteria

Alphaproteobacteria

4.3

SUL_YO3AOP1

Sulfurihydrogenibium sp. YO3AOP1

1838442

Bacteria

Aquificae

Aquificae

1.6

SUL_YEL

Sulfurihydrogenibium yellowstonense SS-5

1534471

Bacteria

Aquificae

Aquificae

2.6

THE_PSE

Thermoanaerobacter pseudethanolicus ATCC 33223

2362816

Bacteria

Firmicutes

Clostridia

0.8

THE_NEA

Thermotoga neapolitana DSM 4359

1884562

Bacteria

Thermotogae

Thermotogae

0.7

THE_PET

Thermotoga petrophila RKU-1

1824357

Bacteria

Thermotogae

Thermotogae

1

THE_RQ2

Thermotoga sp. RQ2

877693

Bacteria

Thermotogae

Thermotogae

3.4

THE_THE

Thermus thermophilus HB8

2116056

Bacteria

Thermi

Thermi

0.5

TRE_DEN

Treponema denticola ATCC 35405

2843201

Bacteria

Spirochaetes

Spirochaetes

0.2

TRE_VIN

Treponema vincentii I

2512734

Bacteria

Spirochaetes

Spirochaetes

0.2

ZYM_MOB

Zymomonas mobilis mobilis ZM4

2223497

Bacteria

Proteobacteria

Alphaproteobacteria

0.8

ARC_FUL

Archaeoglobus fulgidus DSM 4304

2178400

Archaea

Euryarchaeota

Archaeoglobi

0.3

IGN_HOS

Ignicoccus hospitalis KIN4/I

1297538

Archaea

Crenarchaeota

Thermoprotei

1.2

MET_JAN

Methanocaldococcus jannaschii DSM 2661

1664970

Archaea

Euryarchaeota

Methanococci

0.9

MET_MAR_C5

Methanococcus maripaludis C5

1780761

Archaea

Euryarchaeota

Methanococci

0.4

MET_MAR_S2

Methanococcus maripaludis S2

1661137

Archaea

Euryarchaeota

Methanococci

0.5

NAN_EQU

Nanoarchaeum equitans Kin4-M

490885

Archaea

Nanoarchaeota

Nanoarchaea

1

PYR_AER

Pyrobaculum aerophilum IM2

2222430

Archaea

Crenarchaeota

Thermoprotei

0.5

PYR_CAL

Pyrobaculum calidifontis JCM 11548

2009313

Archaea

Crenarchaeota

Thermoprotei

2.6

PYR_HOR

Pyrococcus horikoshii OT3

1738505

Archaea

Euryarchaeota

Thermococci

1.9

SUL_TOK

Sulfolobus tokodaii 7(S311)

2694756

Archaea

Crenarchaeota

Thermoprotei

0.7