Table 1 Number of 5′-end reads collected from three tissues of the two medaka inbred strains according to the 5′-SAGE method. Alignment to the genome was performed using ELAND using default parameters
Total reads | Mapped reads | Uniquely mapped reads | Ratio (%) | |
|---|---|---|---|---|
Hd-rR blastulae | 8,841,684 | 6,461,567 | 5,486,904 | 62.1 % |
Hd-rR testes | 12,007,331 | 7,422,679 | 6,682,875 | 55.7 % |
Hd-rR liver | 8,284,838 | 6,206,848 | 5,766,607 | 69.6 % |
HNI blastulae | 11,404,141 | 10,629,048 | 8,385,917 | 73.5 % |
HNI testes | 10,419,993 | 9,442,123 | 8,585,879 | 82.4 % |
HNI liver | 10,856,232 | 9,844,800 | 9,051,809 | 83.4 % |
Total | 61,814,219 | 50,007,065 | 43,959,991 | 71.1 % |