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Table 1 Summary of the assembly and annotation features of Daldinia eschscholtzii UM 1400 and UM 1020

From: Genome analysis of Daldinia eschscholtzii strains UM 1400 and UM 1020, wood-decaying fungi isolated from human hosts

Features Daldinia eschscholtzii
UM 1400 UM 1020
Reads from small-insert library (Gb) 2.32 4.38
Reads from large-insert library (Gb) 1.48 -
Total Reads (Gb) 3.80 4.38
Assembly size (Mb) 35.8 35.5
Number of contigs (≥200 bp) 1939 640
Contigs size (N50) (bp) 33,562 112,742
GC content of contigs (%) 46.80 46.81
Number of scaffolds (≥1000 bp) 104 598
Scaffolds size (N50) (bp) 701,334 114,605
GC content of scaffolds (%) 46.51 46.80
Number of predicted genes (≥99 bp) 10,822 11,120
Average gene length (bp) 1483 1616
Average number of exons per gene 2.87 2.82
CEGMA completeness score calculated from the complete gene set (%) 94.76 96.37
CEGMA completeness score calculated from both complete and partial gene sets (%) 96.77 97.18
rRNA 29 28
tRNA 168 156
Repetitive sequence (%) 1.02 1.42
Functional annotationa 3357 1974
KEGG 975 998
GO 6471 6223
KOG 6168 6195
Pfam 7690 7725
  1. aAnnotation from SwissProt and NR (for genes without SwissProt hits) with no keywords of predicted, unknown, unnamed and hypothetical
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