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Table 1 Summary of the assembly and annotation features of Daldinia eschscholtzii UM 1400 and UM 1020

From: Genome analysis of Daldinia eschscholtzii strains UM 1400 and UM 1020, wood-decaying fungi isolated from human hosts

Features

Daldinia eschscholtzii

UM 1400

UM 1020

Reads from small-insert library (Gb)

2.32

4.38

Reads from large-insert library (Gb)

1.48

-

Total Reads (Gb)

3.80

4.38

Assembly size (Mb)

35.8

35.5

Number of contigs (≥200 bp)

1939

640

Contigs size (N50) (bp)

33,562

112,742

GC content of contigs (%)

46.80

46.81

Number of scaffolds (≥1000 bp)

104

598

Scaffolds size (N50) (bp)

701,334

114,605

GC content of scaffolds (%)

46.51

46.80

Number of predicted genes (≥99 bp)

10,822

11,120

Average gene length (bp)

1483

1616

Average number of exons per gene

2.87

2.82

CEGMA completeness score calculated from the complete gene set (%)

94.76

96.37

CEGMA completeness score calculated from both complete and partial gene sets (%)

96.77

97.18

rRNA

29

28

tRNA

168

156

Repetitive sequence (%)

1.02

1.42

Functional annotationa

3357

1974

KEGG

975

998

GO

6471

6223

KOG

6168

6195

Pfam

7690

7725

  1. aAnnotation from SwissProt and NR (for genes without SwissProt hits) with no keywords of predicted, unknown, unnamed and hypothetical