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Table 5 Genes with AEI in 2 samples in a region

From: RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles

Region

Gene

AEI ratio Avg ± S.D.

Avg SNPs per gene per sample

GTex eQTL

PheGenI eQTL

PheGenI association

BA10

AKAP12

3.7 ± 0.6

6

   

BA22

LPAR1

3.3 ± 0.7

3

Whole blood

Brain cerebellum

Alcoholism

BA46

PSD3

3.4 ± 0.7

2

 

Brain pons

Memory

Cerebellum

GNAS

2.8 ± 0.4

2

 

Liver, lymphoblastoid

Brain waves

Hippocampus

SRPK2

3.6 ± 0.7

2

Whole blood, esophagus

Lymphoblastoid

 

Raphaenucleus

PDE4DIP

3.4 ± 0.8

3

   
  1. Genes with allelic expression imbalance in 2 subjects in the same brain region after stringent filtering of 30 reads of coverage. Listed is the average and standard deviation of the AEI fold change for each gene and the average number of SNPs contributing to the AEI signal for each gene per sample. Genes were checked against public databases for eQTLs and SNP associations
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BMC Genomics

ISSN: 1471-2164

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