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Table 5 Diapause genes identified from all three references

From: Transcriptomics of diapause in an isogenic self-fertilizing vertebrate

Gene Name No. of Dataa Diapause versus
   pre-Diapause post-Diapause
Dual specificity phosphatase 27 (dusp27) 12 UPb (2.7) UP (2.1)
Kelch-like family member 38 (klhl38) 12 UP (4.8) UP (2.4)
Sequestosome 1 (sqstml) 9 UP (2.1) UP (2.5)
Collagen a-1(IX) chain-like (col9a1) 15 DOWNc (−2.2) DOWN (−2.6)
Dentin sialophosphoprotein-like (dspp) 12 DOWN (−2.3) DOWN (−2.3)
Formin-like protein (fmnll) 9 DOWN (−2.8) DOWN (−3.0)
Transmembrane 4 L6 family member 5-like (tm4sf1) 9 UP (1.6) DOWN (−3.1)
Arginase-2-like (arg2) 15 UP (2.9) d
Rhesus glycoprotein (rhcg) 12 UP (3.7) -
Elastase-1-like (celal) 9 UP (2.5) -
Interleukin-12 subunit b-like (il12b) 9 - UP (3.5)
Galactose-specific lectin nattectin-like (ctl) 15 DOWN (−3.9) UP (3.2)
Egl-9 family hypoxia-inducible factor 3 (egln3) 12 DOWN (−2.5) -
Hemoglobin subunit b-like (hbb) 9 DOWN (−3.6) -
a-Tectorin-like (tecta) 78 - DOWN (−4.6)
Mucin-2-like (muc2) 39 - DOWN (−2.8)
Cartilage intermediate layer protein 2-like (clip2) 27 - DOWN (−2.1)
GATA zinc finger domain-containing protein 14-like (muc5ac) 24 - DOWN (−2.7)
Natterin-3-like 24 - DOWN (−4.6)
Interferon-inducible GTPase 5-like (irgm) 21 - DOWN (−3.4)
CUB and zona pellucida-like domain-containing protein 1-like (zpldl) 18 - DOWN (−4.2)
Sperm acrosome membrane-associated protein 4-like (spaca4) 15 - DOWN (−3.3)
Neoverrucotoxin subunit a-like (neovtx) 12 - DOWN (−4.5)
Cytolysin RTX-S-2-like (rtx-s II) 9 - DOWN (−3.7)
Cytoskeleton-associated protein 4 (ckap4) 9 - DOWN (−3.3)
Seminal plasma glycoprotein 120 (spp120/bsph1) 9 - DOWN (−4.1)
Retinol binding protein 2 (rbp2) 9 - DOWN (−2.2)
  1. aNo. of Data are from three diapause replicates and three genome/transcriptome references (RPKM and fold change data are listed in the Supplementary document);
  2. bAVERAGE(Log2(FoldChange)) ≥ 1.5;
  3. cAVERAGE(Log2(FoldChange))≤1.5;
  4. d-1.5 < AVERAGE(Log2(FoldChange)) < 1.5
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