Table 1 List of snoRNA/scaRNA candidates
IDa | Coordinatesb | Type | Putative target | Copies (TeloSII)c | cDNA/EST | RNA-Seq | Tissue | Homologyd | |
|---|---|---|---|---|---|---|---|---|---|
Cluster1 â–³ | ncR1 | Chr1:14283553..14283663 | H/ACA | / | 9(1) | / | GSM893120 | flowers | A.ly |
ncR2 | Chr1:14283835..14283886 | C/D | / | 4(1) | / | / | / | / | |
ncR3 | Chr1:14283975..14284049 | C/D | 18S/Am1750 (D) | 5(1) | / | GSM442932 | roots | / | |
ncR4 | Chr1:14284343..14284424 | C/D | 18S/Cm307 (D) | 2(1) | / | GSM575247 | flowers | A.ly | |
Cluster2 | ncR5 | Chr2:1836965..1837036 | C/D | 25S/Cm2509 (D) | 1 | / | GSM893122 | flowers | A.ly |
ncR6 | Chr2:1837308..1837401 | C/D | 18S/Gm275 (D) | 1 | / | GSM893120 | flowers | A.ly | |
ncR7 | Chr2:1837461..1837557 | C/D | U2.4/Gm331 (D) | 12(1) | / | GSM893120 | flowers | A.ly | |
Cluster3 | ncR9 | Chr2:5830603..5830668 | C/D | U5/Tm687 (D) | 2(1) | / | GSM893122 | flowers | Cru |
ncR10 | Chr2:5831355..5831456 | C/D | U6.29/Cm590 (D) | 4(1) | / | GSM893123 | flowers | A.ly | |
Cluster4 | ncR11 | Chr4:1480138..1480215 | C/D | 25S/Cm2616 (D) | 1 | / | GSM893120 | flowers | A.ly, C.ru |
ncR12 | Chr4:1480326..1480415 | C/D | U4.1/Am223 (D) | 1 | / | GSM893121 | flowers | A.ly | |
Cluster5 | ncR13 | Chr5:3642290..3642331 | C/D | U6.29/Am296 (D') | 1 | / | / | / | / |
ncR14 | Chr5:3642496..3642628 | C/D | U6.26/Um774 (D) | 1 | / | SRR505744 | leaves | A.ly, C.ru, B.ra | |
Cluster6 | ncR15 | Chr5:20313629..20313716 | C/D | / | 1 | / | GSM893122 | flowers | / |
ncR16 | Chr5:20313841..20313928 | C/D | / | 1 | / | GSM893123 | flowers | A.ly | |
ncR17 | Chr5:20314434..20314506 | C/D | U5/Am921 (D) | 1 | / | GSM893121 | flowers | A.ly | |
Cluster7 | ncR20 | Chr2:9809815..9809713 | C/D | U6-29/Am21 (D) | 1 | EH971193 | SRR505743 | seedlings, roots | A.ly |
ncR21 | Chr2:9809455..9809345 | C/D | U2.4/Cm143 (D) | 1 | / | SRR505745 | flowers | A.ly, C.ru | |
Cluster8 | ncR22 | Chr4:5918068..5917991 | C/D | U2.3/Am345 (D) | 8(6) | / | GSM893121 | flowers | A.ly |
ncR23 | Chr4:5917772..5917612 | C/D | U2.9/Tm207 (D) | 12(4) | / | GSM456944 | flowers | A.ly | |
Cluster9 | ncR24 | Chr5:10673349..10673223 | H/ACA | / | 1 | / | GSM893122 | flowers | A.ly |
ncR25 | Chr5:10672936..10672800 | H/ACA | / | 11(2) | / | GSM893121 | flowers | A.ly | |
Cluster10 | ncR26 | Chr1:28889830..28889897 | C/D | U6.1/Cm740 (D) | 1 | / | GSM896913 | leaves | A.ly, Cru, B.ra |
ncR27 â–³* | Chr1:28889966..28890048 | C/D | U6.1/Am177 (D) | 1 | / | GSM896913 | flowers | A.ly, Cru | |
Single | ncR18 | Chr1:26010695..26010627 | C/D | 18S/Am1558 (D) | 1 | / | / | / | A.ly |
Single | ncR28â–³ | Chr1:6140665..6140735 | C/D | 18S/Gm727 (D) | 1 | / | GSM893122 | flowers | / |