Table 2 List of novel “Telo + site II” ncRNAs
IDa | Coordinatesb | Strand | Copiesc | EST/MPSS | RNA-Seq | Tissue | Homologyd |
|---|---|---|---|---|---|---|---|
ncR30 | Chr1:471418..471193 | reverse | 1 | EL289958 | SRR420813 | seedlings, roots | A.ly, C.ru |
ncR33 | Chr1:6700408..6700704 | forward | 2(1) | EL057995 | GSM800621 | seedlings, roots | A.ly, C.ru, B.ra |
ncR34 | Chr1:9925561..9925850 | forward | 1 | EL068915 | GSM893120 | seedlings, flowers | A.ly |
ncR36 | Chr1:29342637..29342731 | forward | 2(2) | EL217991 | GSM800621 | seedlings | A.ly |
ncR40 | Chr2:3416235..3416396 | forward | 2(2) | EG424594 | GSM893120 | mixtures, flowers | A.ly, C.ru, B.ra |
ncR41 | Chr2:8932605..8932664 | forward | 1 | EH901141 | GSM881679 | seedlings, leaves | A.ly |
ncR42 | Chr2:10463806..10464094 | forward | 1 | EG501397 | SRR505745 | mixtures, flowers | A.ly, B.ra |
ncR43 | Chr2:14879905..14880181 | forward | 2(2) | EL282638 | GSM800621 | seedlings, roots | A.ly |
ncR45 | Chr3:1429026..1429094 | forward | 1 | EH795486 | / | seedlings, roots | A.ly |
ncR46 | Chr3:6000458..6000378 | reverse | 1 | EL131833 | / | seedlings | A.ly |
ncR47 | Chr3:8900985..8901049 | forward | 1 | EH809410 | SRR505744 | seedlings, leaves | A.ly |
ncR49 | Chr3:19219613..19219701 | forward | 2(1) | EL055437 | GSM869251 | seedlings, flowers | A.ly, B.ra |
ncR50 | Chr4:9948779..9948834 | forward | 1 | EL266852 | GSM385393 | seedlings, siliques | A.ly, C.ru, B.ra |
ncR51 | Chr4:13350013..13350417 | forward | 1 | EH846374 | SRR1184187 | seedlings | A.ly, C.ru, Bra |
ncR52 | Chr5:3784963..3784812 | reverse | 1 | EH955479 | SRR420815 | seedlings, roots | / |
ncR53 | Chr5:9386367..9386269 | reverse | 4(2) | EL145385 | GSM575247 | seedlings, flowers | A.ly |