Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli

BMC Genomics

Table 3 Selected novel intergenic small RNA transcripts

Name	Start^a	End^a	Length^b	Direction	TSS coordinates^c	Conservation^d
ES003	29551	29603	53	+	I	Esc,Shi
ES036	740211	740253	43	+	-	Esc,Shi
ES056	1102475	1102566	92	-	+1	Esc,Shi,Cit
ES098	1814204	1814245	42	+	-	Esc,Shi,Sal
ES173	3154543	3154606	64	+	+8	Esc,Shi
ES180	3295030	3295119	90	-	+11	Esc,Shi
ES205	3657034	3657105	72	+	I	Esc,Shi
ES220	4010909	4011013	105	+	I	Esc,Shi
ES222	4056241	4056348	108	+	−12	Esc,Shi
ES239	4434589	4434711	123	+	I	Esc,Shi

^aThe transcript coordinates determined by RNA seq data
^bThe transcript length determined by RNA seq data
^cThe presence of experimentally determined transcription start sites (TSS) from previous studies is indicated, as well as any differences in TSS coordinates between previous studies and present study. For example ‘+1’ denotes a previously determined TSS one nucleotide downstream of that determined in this study. Identical coordinates are indicated with ‘I’ and cases with no previously determined TSSs or predicted promoters are marked with ‘-’
^dThe sequence conservation of the transcripts in other bacterial genera is indicated: Esc Escherichia, Shi Shigella, Sal Salmonella, Cit Citrobacter

ISSN: 1471-2164