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Table 2 Enriched biological processes of up-regulated and down-regulated transcripts in response to handling stress

From: mRNA-seq reveals skeletal muscle atrophy in response to handling stress in a marine teleost, the red cusk-eel (Genypterus chilensis)

GO ID

GO term

p-value

Fold enrichment

 

Enrichment of up regulated transcripts in skeletal muscle under stress

 

GO:0043632

Modification-dependent macromolecule catabolic process

2.3E-06

3.8

GO:0019941

Modification-dependent protein catabolic process

2.3E-06

3.8

GO:0044257

Cellular protein catabolic process

3.6E-06

2.7

GO:0008104

Protein localization

6.8E-06

2.8

GO:0015031

Protein transport

7.4E-06

2.8

GO:0045184

Establishment of protein localization

7.4E-06

3.4

GO:0051603

Proteolysis involved in cellular protein catabolic process

9.1E-06

3.4

GO:0044265

Cellular macromolecule catabolic process

1.2E-05

3.2

GO:0046907

Intracellullar transport

1.4E-05

3.3

GO:0030163

Protein catabolic process

3.0E-05

3.1

GO:0009057

Macromolecule catabolic process

8.4E-05

2.8

GO:0006396

RNA processing

3.3E-04

2.8

GO:0006511

Ubiquitin-dependent protein catabolic process

4.4E-03

3.0

 

Enrichment of down regulated transcripts in skeletal muscle under stress

 

GO:0006941

Striated muscle contraction

1.9E-06

4.3

GO:0007517

Muscle organ development

4.3E-06

4.2

GO:0006936

Muscle contraction

5.5E-06

5,7

GO:0003012

Muscle system process

2.3E-05

3.5

GO:0014706

Striated muscle tissue development

3.1E-05

4.9

GO:0060537

Muscle tissue development

5.8E-05

6.7

GO:0048738

Cardiac muscle tissue development

6.6E-05

6.7

GO:0043462

Regulation of ATPase activity

9.5E-05

3.5

GO:0060048

Cardiac muscle contraction

2.5E-03

4.2

GO:0006937

Regulation of muscle contraction

6.5E-03

3.1