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Table 3 Parameters estimation and likelihood ratio tests for the branch-site models

From: Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress

Hypothesis

lnL

Site class 0

Site class 1

Site class 2a

Site class 2b

2ΔlnL

Alternative

−9212.750

p0 = 0.36828 ω0(b)1 = 0.17271 ω0(f)2 = 0.17271

p1 = 0.56715

p2a = 0.02542

p2b = 0.03915

35.237**

ω1(b) = 1

ω2a(b) = 0.17271

ω2b(b) = 1

ω1(f) = 1

ω2a(f) = 999

ω2b(f) = 999

Null

−9230.368

p0 = 0.31965

p1 = 0.45639

p2a = 0.09225

p2b = 0.13171

 

ω0(b=)0.17495

ω1(b) = 1.00000

ω2a(b) = 0.17495

ω2b(b) = 1.00000

ω0(f) = 0.17495

ω1(f) = 1.00000

ω2a(f) = 1.00000

ω2b(f) = 1.00000

  1. Note: **p < 0.01 (χ2 test); 1 Background ω; 2 Foreground ω