Fig. 3

Genome-wide mapping of CgrA binding sites. a shows JBrowse view of 295 CgrA binding peaks across the R. centenum genome as determined by ChIP-seq. Peak height indicates the sequencing read depth at each genomic position. b Representative ChIP-seq peak that mapped to an intergenic locus upstream of a gene. c Representative ChIP-seq peak located between divergently transcribed gene pairs. d Representative ChIP-seq peak located within a protein coding sequence with a gene downstream of the binding sites. e Distribution of the genomic localizations of the binding sites with regard to the closest situated genes. For binding inside a coding sequence, we distinguished between purely intragenic positions (intragenic) and intra genic positions upstream of another transcription unit (Intragenic, but upstream)