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Table 1 Summary of the alignment statistics for four Holstein cows genome

From: Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

Animal ID Number of total reads Number of mapped reads Number of bases in mapped reads Mean depth Genome coverage
44–6 766,207,530 720,413,573 (94.0 %) 72.8 Gb 27.3 X 98.7 %
46–25 731,266,080 691,737,221 (94.6 %) 69.9 Gb 26.2 X 98.7 %
49–25 766,453,890 724,694,871 (94.5 %) 73.2Gb 27.4 X 98.8 %
50–38 771,642,408 718,944,575 (93.2 %) 72.6 Gb 27.2 X 98.7 %
Total 3,035,569,908 2,855,790,240 (94.1 %) 288.5 Gb 27.0 X