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Table 2 Summary statistics of the identified variants

From: Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

Total SNPs 10,796,794
Homozygous SNPs 5,078,645 (47.0)
Heterozygous SNPs 5,718,149 (53.0)
Novel SNPs 482,835 (4.5)
Known SNPs 10,313,959 (95.5 )
Biallelic SNPs 10,780,608 (99.9)
Triallelic SNPs 16,186 (0.1)
Ts:Tv 2.11:1.00
Total indels 1,295,036
Heterozygous indels 566,749 (43.8)
Homozygous indels 728,287 (56.2)
Novel indels 231,359 (17.9)
Known indels 1,063,677 (82.1)
Deletions 655,942 (50.7)
Insertions 639,094 (49.3)
  1. Values in parentheses are the percentage of variants in the specific class of the total variants that type of variant