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Table 2 Summary statistics of the identified variants

From: Deep sequencing of Danish Holstein dairy cattle for variant detection and insight into potential loss-of-function variants in protein coding genes

Total SNPs

10,796,794

Homozygous SNPs

5,078,645 (47.0)

Heterozygous SNPs

5,718,149 (53.0)

Novel SNPs

482,835 (4.5)

Known SNPs

10,313,959 (95.5 )

Biallelic SNPs

10,780,608 (99.9)

Triallelic SNPs

16,186 (0.1)

Ts:Tv

2.11:1.00

Total indels

1,295,036

Heterozygous indels

566,749 (43.8)

Homozygous indels

728,287 (56.2)

Novel indels

231,359 (17.9)

Known indels

1,063,677 (82.1)

Deletions

655,942 (50.7)

Insertions

639,094 (49.3)

  1. Values in parentheses are the percentage of variants in the specific class of the total variants that type of variant
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BMC Genomics

ISSN: 1471-2164

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