| | Relationship group | |
---|
Analysisa
| Number of SNPs | Identity | Full-sibs | Parent-Offspring | Non-sib Offspringb
| Differencec
|
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All | 30,923 | 0.732 | 0.318 | 0.314 | 0.110 | 0.208 |
HW-0.05 | 24,899 | 1.001 | 0.362 | 0.350 | 0.016 | 0.345 |
MAF.48 | 27,866 | 0.881 | 0.384 | 0.378 | 0.136 | 0.248 |
HW-.05sub | 24,899 | 1.014 | 0.454 | 0.461 | 0.014 | 0.447 |
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aAll: Including all SNPs passing the bioinformatics thresholds; HW-0.05: removing SNPs with Hardy-Weinberg deviations of less than −0.05; MAF.48: removing SNPs with MAF of at least 0.48; HW-.05sub: method HW-0.05, but removing any recorded offspring with an ‘HW-.05’ relatedness with one of its recorded parents of less than 0.25
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bAll pairs of offspring from families with distinct parents (i.e. having a different sire and different dam)
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cThe difference between the full-sibs and the non-sib offspring columns