Table 4 Transcripts associated with melanogenesis that occur in either organs and ventral feathers or organs and dorsal feathers (see Methods for details). A transcript was assigned as being associated with melanogenesis if it showed sequence homology to one of 86 proteins from the melanin pathway of the zebra finch (KEGG database)
Symbol | Name | GO slim categories | Characterized in | Best BLAST score against Gallus gallus |
|---|---|---|---|---|
ADORA2A | Adenosine A2a Receptor | 1,5,8 | Mus musculus | |
ARF1 | ADP-Ribosylation Factor 1 | 12 | Mus musculus | 6E-96 |
BSG | Basigin | 5 | Gallus gallus | |
CALM | Calmodulin | 5 | Gallus gallus | 3E-76; 6E-82 |
FZD3 | Frizzled 3 | 2,4,13 | Gallus gallus | 9.00E-86 |
FZD4 | Frizzled 4 | 8,9,13 | Gallus gallus | 0.00E + 00 |
HRAS1 | GTPase HRas | 2,5,6,8,12 | Gallus gallus | |
LATS1 | Large Tumor Suppressor Kinase 1 | 3,6 | Rattus norvegicus | |
LIMK1 | LIM domain kinase 1 | 6,11,13 | Gallus gallus | 6.00E-174 |
LOC771574 | (uncharacterised protein) | 7 | - | 0.00E + 00 |
MAPKAPK2 | Mitogen-activated protein kinase-activated protein kinase 2 | 1,12 | Rattus norvegicus | 0.00E + 00 |
NEK2 | NIMA-Related Kinase 2 | 3,6 | Arabidopsis thaliana | 1.00E-106 |
OPN3 | Opsin 3 | 9 | Mus musculus | 8.00E-154 |
PAK2 | P21 Protein (Cdc42/Rac)-Activated Kinase 2 | 13 | Mus musculus | 0.00E + 00 |
PBRM1 | Protein polybromo-1 | 3,8 | Gallus gallus | |
PLCL1 | Phospholipase C-Like 1 | 7 | Mus musculus | 0.00E + 00 |
PLK2 | Polo-Like Kinase 2 | 9 | Mus musculus | 9E-57; 2E-64 |
RAB11A | Ras-related protein Rab-11A | 10,12 | Gallus gallus | 1.00E-117 |
RAB8A | RAB8A, Member RAS Oncogene Family | 4,6,10,12,13 | Mus musculus | 3.00E-84 |
RAC1 | Ras-Related C3 Botulinum Toxin Substrate 1 | 2,6,7,10,12,13 | Rattus norvegicus | 3.00E-111 |
RALA | Ras-Related Protein Ral-A | 6,12 | Rattus norvegicus | |
SAR1A | SAR1 Homolog A | 12 | Rattus norvegicus | 1.00E-115 |
Sox9 | Sox9 | 1,2,3,4,6,8,11,13 | Gallus gallus | 5.00E-65 |
STK4 | Serine/threonine-protein kinase 4 | 1,4,11,13 | Gallus gallus | |
SYK | Tyrosine-protein kinase SYK | 1,2,5,7,8,12 | Gallus gallus | 1.00E-95 |
TTBK2 | Tau Tubulin Kinase 2 | 4,6,13 | Mus musculus | |
VAV3 | Vav 3 Guanine Nucleotide Exchange Factor | 1,2,6,7,12 | Rattus norvegicus | |
WNT4 | Protein Wnt-4 | Gallus gallus | 9.00E-57 |