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Table 1 List of commonly significantly differentially expressed genes due to transfection of PEI alone (P), and PEI with Invitrogen (PI) and Dharmacon (PD) control siRNA respectively

From: The effects of transfection reagent polyethyleneimine (PEI) and non-targeting control siRNAs on global gene expression in human aortic smooth muscle cells

Genes

P vs. NT

PI vs. NT

PD vs. NT

 

Log FC

P value

FDR

log FC

P value

FDR

Log FC

PV value

FDR

KRT5

−9.00108542

1.82E-08

9.11E-07

−9.00108542

1.12E-08

1.85E-06

−9.00108542

4.00E-09

5.77E-07

DSC2

−5.547567862

9.33E-06

0.000210938

−7.514505361

3.54E-07

3.79E-05

−5.843576549

2.01E-06

0.00010804

CASP14

−4.866920217

1.36E-06

3.98E-05

−6.718742357

9.08E-09

1.56E-06

−3.84210716

2.16E-05

0.000762738

PKP1

−4.065832231

4.03E-05

0.000734415

−5.837618386

4.72E-07

4.98E-05

−4.812633855

2.41E-06

0.000126389

SFN

−3.866190605

1.96E-05

0.000390234

−2.706646929

0.000813618

0.022294014

−5.116141429

1.68E-07

1.47E-05

XIST

−2.6415241

0.000447384

0.005355807

−4.189237025

9.64E-07

9.24E-05

−2.564333239

0.000399303

0.007636661

KIF1A

−2.37198378

0.001162629

0.011613329

−6.165808144

1.86E-09

3.89E-07

−2.639316704

0.000279027

0.005863775

PABPC1L

−1.469888511

5.36E-08

2.38E-06

−1.136168153

1.40E-05

0.000867902

−1.006563861

7.85E-05

0.002217316

MMRN2

−1.148174676

2.51E-05

0.000484772

−1.125962103

2.61E-05

0.00144306

−1.140277865

1.12E-05

0.00044101

STAT4

1.030820203

0.00090642

0.009359621

1.164708993

0.000135637

0.005691294

1.401188438

2.28E-06

0.000120413

ELN

1.327728145

5.88E-23

1.68E-20

1.389401412

3.20E-25

1.34E-21

1.303860319

1.21E-22

1.52E-19

CCL8

1.434021582

2.81E-11

2.43E-09

1.621652693

1.26E-14

8.32E-12

1.716686958

7.40E-17

3.37E-14

SOD2

1.461039459

3.51E-39

2.20E-36

1.007297504

7.52E-20

1.18E-16

1.329823799

5.71E-33

1.79E-29

CNTNAP2

1.550048726

6.82E-17

1.17E-14

1.167033839

4.31E-10

1.13E-07

1.302670483

1.60E-12

4.10E-10

C8orf4

1.657269124

1.89E-46

2.16E-43

1.214785377

1.07E-25

6.74E-22

1.229534359

1.34E-26

3.37E-23

NR3C2

1.839357043

6.15E-12

6.08E-10

1.505931617

3.47E-08

4.93E-06

1.89042933

2.94E-13

7.86E-11

IL36B

2.065054755

1.81E-13

2.09E-11

1.371901177

1.91E-06

0.000158997

1.623123119

7.63E-09

1.01E-06

CSF2

2.157136236

2.41E-36

1.38E-33

1.04449791

5.99E-10

1.46E-07

1.692407468

1.62E-23

2.77E-20

AMH

2.487063814

2.12E-08

1.05E-06

1.631133689

0.00045514

0.014311243

2.135611981

1.50E-06

8.61E-05

IL36RN

4.508694239

2.15E-34

1.12E-31

3.347303687

2.41E-18

2.33E-15

3.737917275

1.76E-23

2.77E-20