Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome

BMC Genomics

Table 4 Mapping statistics to the P. taeda v1.01 genome

Assembly	Total Sequences	Identity	Coverage	Unique Hits	Non-unique hits	Total % mapped
Pinus patula (EviGene Loci)	66 377	95	95	33.53 %	16.78 %	50.31 %
Pinus patula (EviGene Loci)	66 377	95	50	34.44 %	18.10 %	52.55 %
Pinus patula v1.0	52 112	95	95	42.68 %	21.35 %	64.03 %
Pinus patula v1.0	52 112	95	50	43.84 %	23.04 %	66.87 %
Pinus banksiana	21 675	95	95	73.25 %	15.26 %	88.51 %
Pinus banksiana	21 675	95	50	74.72 %	17.62 %	92.34 %
Pinus contorta	14 375	95	95	70.23 %	14.91 %	85.15 %
Pinus contorta	14 375	95	50	70.37 %	17.27 %	87.64 %
Pinus lambertiana	48 891	95	95	25.16 %	1.07 %	26.23 %
Pinus lambertiana	48 891	95	50	31.04 %	2.07 %	33.11 %
Pinus pinaster	14 130	95	95	56.24 %	12.76 %	69.00 %
Pinus pinaster	14 130	95	50	61.27 %	16.28 %	77.54 %
Pinus radiata	4 742	95	95	46.06 %	11.66 %	57.72 %
Pinus radiata	4 742	95	50	57.11 %	15.67 %	72.78 %
Pinus sylvestris	11 248	95	95	47.75 %	16.79 %	64.54 %
Pinus sylvestris	11 248	95	50	53.90 %	20.96 %	74.87 %
Pinus taeda	83 285	95	95	48.72 %	7.82 %	56.54 %
Pinus taeda	83 285	95	50	57.64 %	11.99 %	69.63 %

ISSN: 1471-2164