Fig. 6

Whole genome recombination mappings as predicted by ClonalFrame coalescent methods. Red bars represent recombination events and green ticks represent mutations. Strains SH511 and 1979 share almost identical recombination profiles, with non-indigenous human C. pneumoniae and the DC9 frog strain sharing recombination events at discrete loci. The predicted whole genome phylogeny based on recombination and mutation events is consistent with the groupings demonstrated using BEAST and MrBayes prediction methods