Skip to main content

Table 1 Percentage nucleotide pairwise identities of all C. pneumoniae strains

From: Phylogenetic analysis of human Chlamydia pneumoniae strains reveals a distinct Australian indigenous clade that predates European exploration of the continent

  CM1 GiD TOR-1 AR39 YK41 J138 CV14 PB2 PB1 CWL011 Wien3 CWL029 U1271 CV15 Wien1 K7 Wien2 MUL2216 Panola H12 UZG1 TW183 A03 WA97001 1979 SH511 IOL207 DC9 LPCoLN B21
CM1   100 100 100 99.9 99.7 99.7 99.7 99.7 99.8 99.8 99.6 99.8 99.7 99.7 99.8 99.8 99.8 99.8 99.4 99.6 99.6 99.5 99.7 98.6 98.7 99.2 97.9 94.6 94.6
GiD 100   100 100 99.9 99.7 99.7 99.7 99.7 99.8 99.8 99.6 99.8 99.7 99.7 99.8 99.8 99.8 99.8 99.4 99.6 99.6 99.5 99.7 98.6 98.7 99.2 97.9 94.6 94.6
TOR-1 100 100   100 99.9 99.7 99.7 99.7 99.7 99.8 99.8 99.6 99.8 99.7 99.7 99.8 99.8 99.8 99.8 99.4 99.6 99.6 99.5 99.7 98.6 98.7 99.2 97.9 94.6 94.6
AR39 100 100 100   99.9 99.7 99.7 99.7 99.7 99.8 99.8 99.6 99.8 99.7 99.7 99.8 99.8 99.8 99.8 99.4 99.6 99.6 99.5 99.7 98.6 98.7 99.2 97.9 94.6 94.6
YK41 99.9 99.9 99.9 99.9   99.6 99.7 99.7 99.7 99.7 99.7 99.6 99.7 99.7 99.7 99.7 99.7 99.7 99.7 99.4 99.5 99.5 99.5 99.7 98.6 98.6 99.2 97.9 94.6 94.6
J138 99.7 99.7 99.7 99.7 99.6   99.7 99.7 99.7 99.7 99.7 99.6 99.7 99.7 99.7 99.7 99.7 99.7 99.7 99.4 99.5 99.5 99.5 99.5 98.7 98.7 99.2 97.9 94.8 94.8
CV14 99.7 99.7 99.7 99.7 99.7 99.7   100 100 100 100 99.8 100 100 100 100 100 100 100 99.6 99.7 99.7 99.6 99.5 98.7 98.7 99.4 98 94.7 94.7
PB2 99.7 99.7 99.7 99.7 99.7 99.7 100   100 100 100 99.8 100 100 100 99.9 99.9 99.9 99.9 99.6 99.7 99.7 99.6 99.5 98.7 98.7 99.4 98 94.7 94.7
PB1 99.7 99.7 99.7 99.7 99.7 99.7 100 100   100 100 99.8 100 100 100 100 100 100 99.9 99.6 99.7 99.7 99.6 99.5 98.7 98.7 99.4 98 94.7 94.7
CWL011 99.8 99.8 99.8 99.8 99.7 99.7 100 100 100   100 99.9 100 100 100 100 100 100 100 99.7 99.7 99.7 99.6 99.5 98.7 98.8 99.4 98 94.7 94.7
Wein3 99.8 99.8 99.8 99.8 99.7 99.7 100 100 100 100   99.9 100 100 100 100 100 100 100 99.7 99.7 99.7 99.6 99.5 98.7 98.8 99.4 98 94.7 94.7
CWL029 99.6 99.6 99.6 99.6 99.6 99.6 99.8 99.8 99.8 99.9 99.9   99.9 99.8 99.8 99.9 99.9 99.9 99.9 99.5 99.6 99.6 99.8 99.4 98.9 98.9 99.3 97.9 94.6 94.6
U1271 99.8 99.8 99.8 99.8 99.7 99.7 100 100 100 100 100 99.9   100 100 100 100 100 100 99.7 99.7 99.7 99.6 99.5 98.7 98.8 99.4 98 94.7 94.7
CV15 99.7 99.7 99.7 99.7 99.7 99.7 100 100 100 100 100 99.8 100   100 100 100 100 100 99.6 99.7 99.7 99.6 99.5 98.7 98.7 99.4 98 94.7 94.7
Wein1 99.7 99.7 99.7 99.7 99.7 99.7 100 100 100 100 100 99.8 100 100   100 100 100 100 99.6 99.7 99.7 99.6 99.5 98.7 98.7 99.4 98 94.7 94.7
K7 99.8 99.8 99.8 99.8 99.7 99.7 100 99.9 100 100 100 99.9 100 100 100   100 100 100 99.7 99.7 99.7 99.6 99.5 98.7 98.8 99.4 98 94.7 94.7
Wein2 99.8 99.8 99.8 99.8 99.7 99.7 100 99.9 100 100 100 99.9 100 100 100 100   100 100 99.7 99.7 99.7 99.6 99.5 98.7 98.8 99.4 98 94.7 94.7
MUL2216 99.8 99.8 99.8 99.8 99.7 99.7 100 99.9 100 100 100 99.9 100 100 100 100 100   100 99.7 99.7 99.7 99.6 99.5 98.7 98.8 99.4 98 94.7 94.7
Panola 99.8 99.8 99.8 99.8 99.7 99.7 100 99.9 99.9 100 100 99.9 100 100 100 100 100 100   99.7 99.7 99.7 99.6 99.5 98.7 98.8 99.4 98 94.7 94.7
H12 99.4 99.4 99.4 99.4 99.4 99.4 99.6 99.6 99.6 99.7 99.7 99.5 99.7 99.6 99.6 99.7 99.7 99.7 99.7   99.4 99.4 99.3 99.2 98.4 98.4 99.1 97.8 94.4 94.4
UZG1 99.6 99.6 99.6 99.6 99.5 99.5 99.7 99.7 99.7 99.7 99.7 99.6 99.7 99.7 99.7 99.7 99.7 99.7 99.7 99.4   100 99.6 99.3 98.8 98.8 99.2 98.2 94.5 94.5
TW183 99.6 99.6 99.6 99.6 99.5 99.5 99.7 99.7 99.7 99.7 99.7 99.6 99.7 99.7 99.7 99.7 99.7 99.7 99.7 99.4 100   99.6 99.3 98.8 98.8 99.2 98.2 94.5 94.5
A03 99.5 99.5 99.5 99.5 99.5 99.5 99.6 99.6 99.6 99.6 99.6 99.8 99.6 99.6 99.6 99.6 99.6 99.6 99.6 99.3 99.6 99.6   99.3 98.9 98.9 99.1 97.9 94.5 94.4
WA97001 99.7 99.7 99.7 99.7 99.7 99.5 99.5 99.5 99.5 99.5 99.5 99.4 99.5 99.5 99.5 99.5 99.5 99.5 99.5 99.2 99.3 99.3 99.3   98.8 98.8 99 97.8 94.5 94.5
1979 98.6 98.6 98.6 98.6 98.6 98.7 98.7 98.7 98.7 98.7 98.7 98.9 98.7 98.7 98.7 98.7 98.7 98.7 98.7 98.4 98.8 98.8 98.9 98.8   99.7 98.4 97.5 94.2 94.2
SH511 98.7 98.7 98.7 98.7 98.6 98.7 98.7 98.7 98.7 98.8 98.8 98.9 98.8 98.7 98.7 98.8 98.8 98.8 98.8 98.4 98.8 98.8 98.9 98.8 99.7   98.4 97.5 94.3 94.3
IOL207 99.2 99.2 99.2 99.2 99.2 99.2 99.4 99.4 99.4 99.4 99.4 99.3 99.4 99.4 99.4 99.4 99.4 99.4 99.4 99.1 99.2 99.2 99.1 99 98.4 98.4   97.6 94.3 94.3
DC9 97.9 97.9 97.9 97.9 97.9 97.9 98 98 98 98 98 97.9 98 98 98 98 98 98 98 97.8 98.2 98.2 97.9 97.8 97.5 97.5 97.6   93.6 93.6
LPCoLN 94.6 94.6 94.6 94.6 94.6 94.8 94.7 94.7 94.7 94.7 94.7 94.6 94.7 94.7 94.7 94.7 94.7 94.7 94.7 94.4 94.5 94.5 94.5 94.5 94.2 94.3 94.3 93.6   100
B21 94.6 94.6 94.6 94.6 94.6 94.8 94.7 94.7 94.7 94.7 94.7 94.6 94.7 94.7 94.7 94.7 94.7 94.7 94.7 94.4 94.5 94.5 94.4 94.5 94.2 94.3 94.3 93.6 100