Table 3 Enriched gene ontology terms associated with biological processes
From: Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines
Stage | GO term | Biological processes | DEG | P-value | FDR |
|---|---|---|---|---|---|
1 | GO:0006915 | Apoptosis | 31 | 4.0E-04 | 3.4E-03 |
GO:0006073 | Cellular Glucan Metabolic Process | 17 | 6.8E-05 | 7.4E-04 | |
GO:0006334 | Nucleosome Assembly | 15 | 6.9E-06 | 1.2E-04 | |
GO:0006412 | Translation | 71 | 2.9E-10 | 6.4E-08 | |
2 | GO:0006915 | Apoptosis | 39 | 1.1E-05 | 7.9E-04 |
GO:0006073 | Cellular Glucan Metabolic Process | 18 | 1.0E-04 | 3.4E-03 | |
GO:0006857 | Oligopeptide Transport | 15 | 1.6E-04 | 3.5E-03 | |
GO:0055114 | Oxidation Reduction | 140 | 3.6E-06 | 7.9E-04 | |
GO:0055085 | Transmembrane Transport | 68 | 3.4E-04 | 6.3E-03 | |
3 | GO:0006915 | Apoptosis | 42 | 1.9E-10 | 1.7E-08 |
GO:0006096 | Glycolysis | 10 | 1.2E-03 | 9.8E-03 | |
GO:0045087 | Innate Immune Response | 20 | 2.2E-06 | 5.1E-05 | |
GO:0015979 | Photosynthesis | 20 | 6.0E-07 | 2.2E-05 | |
4 | GO:0006091 | Generation of precursor metabolites and energy (Glycolysis and Photosynthesis) | 14 | 7.0E-06 | 4.9E-04 |
GO:0015979 | Photosynthesis | 16 | 4.1E-09 | 5.6E-07 | |
5 | GO:0008652 | Cellular Amino acid Biosynthetic Process | 18 | 1.0E-03 | 4.0E-03 |
GO:0006096 | Glycolysis | 12 | 7.3E-04 | 3.8E-03 | |
GO:0006184 | GTP Catabolic Process | 7 | 6.6E-04 | 3.6E-03 | |
GO:0008610 | Lipid Biosynthetic Process | 30 | 9.2E-04 | 3.8E-03 | |
GO:0006108 | Malate Metabolic Process | 6 | 8.3E-05 | 5.7E-04 | |
GO:0006334 | Nucleosome Assembly | 20 | 9.2E-09 | 2.1E-07 | |
GO:0015979 | Photosynthesis | 55 | 4.4E-30 | 1.1E-27 | |
GO:0009765 | Photosynthesis, Light Harvesting | 14 | 1.3E-09 | 6.6E-08 | |
GO:0006814 | Sodium ion Transport | 5 | 8.2E-04 | 3.8E-03 | |
GO:0006414 | Translational Elongation | 9 | 4.6E-04 | 2.7E-03 | |
GO:0006412 | Translation | 63 | 1.7E-06 | 1.9E-05 |