Table 4 Transcription factor families significantly enriched in developing seed stages
From: Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines
Stages | TF family | FDR | Gene symbols | DEGs associated with the TF family | Functions |
|---|---|---|---|---|---|
1 | WRKY | 4.92E-04 | WRKY33, WRKY40, WRKY29, WRKY6, WRKY28, WRKY23, WRKY15, WRKY11 | Glyma11g29720, Glyma08g23380, Glyma08g02160, Glyma13g44730, Glyma09g00820, Glyma12g10350 Glyma08g08720, Glyma13g38630, Glyma15g11680, Glyma03g37940, Glyma17g18480, Glyma05g20710, Glyma06g08120, Glyma04g08060 | Associated with plant defense, senescence, and abiotic stress [73] |
GRAS | 3.19E-04 | SCL1, SCL3, SCL5, SCL14, PAT1, SGR7 | Glyma04g28490, Glyma18g09030, Glyma08g43780, Glyma11g14670, Glyma14g27290, Glyma13g09220, Glyma15g04160, Glyma14g01960, Glyma14g01020, Glyma17g17400, Glyma13g02840 | Involved in gibberellin signaling, phytochrome A signal transduction, controls radial patterning [74–77] | |
2 | ZIM | 8.60E-03 | JAZ6, JAZ12 | Glyma17g04850, Glyma16g01220, Glyma07g04630 | Repressor of jasmonate responses [78] |
ZF-HD | 7.44E-03 | HB22, HB24, HB33 | Glyma06g09970, Glyma04g09910, Glyma08g06120, Glyma11g07360, Glyma14g35770 | Regulator of ABA-response [79] | |
3 | TCP | 3.23E-05 | TCP3, TCP20 | Glyma09g42140, Glyma16g05840, Glyma19g26560, Glyma12g35720, Glyma06g34330, Glyma13g34690, Glyma03g02090, Glyma09g42120 | Controls cell expansion and morphogenesis, negatively regulates auxin response, and promotes flavonoid synthesis [80, 81] |
SNF2 | 1.63E-03 | EDA16, RGD3, PIE1, SYD, CHR5 | Glyma07g31180, Glyma09g36910, Glyma02g29380, Glyma17g02540, Glyma13g25310, Glyma02g45000 | Embryo sac development, repressor of flowering, chromatin remodeling, gravitrophism [82] | |
GRF | 8.68E-03 | Â | Glyma19g28010 | Cotyledon growth [83] | |
CAMTA | 4.18E-04 | CAMTA3, SR1 | Glyma05g31190, Glyma08g14370, Glyma17g04310 | ||
4 | TCP | 9.25E-03 | TCP3 | Glyma13g34690, Glyma09g42120, Glyma09g42140 | Negatively regulates auxin response, and promotes flavonoid synthesis [80] |
CAMTA | 8.14E-04 | CAMTA3, SR1 | Glyma05g31190, Glyma08g14370 | ||
5 | MBF1 | 5.27E-03 | MBF1B | Glyma06g42890 | Negative regulator of ABA-dependent inhibition of germination [85] |
CAMTA | 9.57E-03 | CAMTA3, SR1 | Glyma08g11080, Glyma08g14370 |