Skip to main content

Table 1 Collimonas strains and their genomic features

From: Exploring the genomic traits of fungus-feeding bacterial genus Collimonas

Feature Collimonas fungivorans Collimonas pratensis Collimonas arenae
  Ter331 Ter6 Ter91 Ter291 Ter10 Ter282
Source Inner coastal dune soil in Terschelling, the Netherlands
Chromosome size (Mb) 5.2 5.6 5.7 5.6 4.7 4.7
Plasmid size 40 kb NA NA NA NA NA
G + C % 59.6 % 59 % 58.8 % 59 % 56.8 % 56.8 %
Protein-encoding sequences (CDSs) 4910 5233 5424 5228 4436 4473
CDSs on plasmid 44 NA NA NA NA NA
Hypothetical proteins 1091 1209 1292 1214 1101 991
Average CDS length (nt) 927 923 904 917 834 899
Coding (%) 87.8 % 86.2 % 85.6 % 85.8 % 78.4 % 85.4 %
rRNA 9 9 9 9 9 9
tRNA 52 52 52 51 52 53
contigs 1 1 1 1 1 1
  1. NA not applicable, refers to strains in which no plasmids are naturally present