Table 1 Collimonas strains and their genomic features
From: Exploring the genomic traits of fungus-feeding bacterial genus Collimonas
Feature | Collimonas fungivorans | Collimonas pratensis | Collimonas arenae | |||
|---|---|---|---|---|---|---|
| Â | Ter331 | Ter6 | Ter91 | Ter291 | Ter10 | Ter282 |
Source | Inner coastal dune soil in Terschelling, the Netherlands | |||||
Chromosome size (Mb) | 5.2 | 5.6 | 5.7 | 5.6 | 4.7 | 4.7 |
Plasmid size | 40Â kb | NA | NA | NA | NA | NA |
G + C % | 59.6 % | 59 % | 58.8 % | 59 % | 56.8 % | 56.8 % |
Protein-encoding sequences (CDSs) | 4910 | 5233 | 5424 | 5228 | 4436 | 4473 |
CDSs on plasmid | 44 | NA | NA | NA | NA | NA |
Hypothetical proteins | 1091 | 1209 | 1292 | 1214 | 1101 | 991 |
Average CDS length (nt) | 927 | 923 | 904 | 917 | 834 | 899 |
Coding (%) | 87.8Â % | 86.2Â % | 85.6Â % | 85.8Â % | 78.4Â % | 85.4Â % |
rRNA | 9 | 9 | 9 | 9 | 9 | 9 |
tRNA | 52 | 52 | 52 | 51 | 52 | 53 |
contigs | 1 | 1 | 1 | 1 | 1 | 1 |