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Table 4 Confirmed interactions in COREs from the NCI60 for η=0.65

From: Identification of miRNA-mRNA regulatory modules by exploring collective group relationships

ID

Confirmed interactions

C1N65

miR-141: BICD2, CDH1, EHF, IRF6, KLF5,

 

PARD6B, RAB32, RAB8B, RHOD, SLC20A1,

 

TWIST1;

 

miR-148b: BIK, DDR1, ELOVL5, ERMP1, FAM84B,

 

KLF5, MAL2, MAP1B, QKI, RAB8B, ST14,

 

TBC1D30, TRAF4;

 

miR-200a: BICD2, CDH1, EHF, ELOVL5, GRHL2,

 

ITGB4, MAP1B, MSN, PARD6B, RAB32, TWIST1;

 

miR-200b: AP1S2, ARHGAP32, CDH1, CLDN4, DSP,

 

ELOVL5, ENSA, EPCAM, ESRP2, KIAA1949, KLF5,

 

MAL2, MAP1B, MAPK13, MSN, OSTM1, PARD6B,

 

QKI, SACS, SLC20A1, TINAGL1, TTL, TWIST1;

 

miR-200c: AP1S2, CDH1, ENSA, ICA1, MSN,

 

OSTM1, PARD6B, QKI, SLC20A1, ST14, TPD52L1,

 

TWIST1, VIM;

 

miR-203: ARHGAP32, CDH1, ENSA, FAM84B,

 

OVOL1, PARD6B, TC2N, TPD52L1, VIM;

 

miR-301a: AP1S2, BICD2, ERMP1, ESRP2, IRF6,

 

MAL2, MAP1B, MAP7, PRRG4, SLC20A1, TRAF4,

 

TTL, TWIST1;

 

miR-301b: AP1S2, BICD2, MAP1B, PRRG4, TRAF4,

 

TTL;

 

miR-32: BICD2, QKI, RAB8B, RBM47, RNF43,

 

SACS, TWIST1, VIM;

 

miR-429: GRHL1, QKI, TWIST1;

 

miR-590-3p: CDS1, DSP, ELOVL5, MAP1B, MRPL49,

 

PARD6B, RAB8B, RBM47, SACS, SLC20A1;

 

miR-7: ARHGAP32, DSC2, DSP, EPN3, ESRP1,

 

F11R, FAM83H, FAM84B, GRHL1, GSR, LPAR2,

 

MAP1B, MYO5B, PARD6B, PLS1, QKI, RAB11FIP4,

 

S100A14, SACS, SLC29A2, TRAF4;

C2N65

miR-141: TMC5;

 

miR-148b: EFNA1, MUC13, TBC1D30, TSKU;

 

miR-200a: PLEKHF2, TMC5, TSKU;

 

miR-200b: EFNA1, TACSTD2;

 

miR-200c: EFNA1; miR-301a: PLEKHF2, TSKU;

 

miR-301b: PLEKHF2; miR-32: PALM2-AKAP2;

 

miR-429: EFNA1; miR-7: ANGEL1, LPAR2, TSKU;

C3N65

miR-101: AP1S2, BICD2, CLDN4, DLG3, MSN,

 

RAB8B, SACS, SLC29A2, TST;

 

miR-106b: BICD2, BMP4, DSP, ESRP1, F11R,

 

GIPC2, KIAA1522, MAP7, MCF2L, MPZL2, MYO5B,

 

OSTM1, PARD6B, PLS1, RAB8B, RBM47, S100P,