Table 1 X. citri pv. citri strain isolation origin and sequencing information
Strain | Pathotype | Geographic origin | Isolation host | Year isolated | Reads | Contig number | Total (bp) | N50 | Sequenced by | Mapped (bp) | % reads mapped |
|---|---|---|---|---|---|---|---|---|---|---|---|
JJ10-1 | A | Rodrigues Island | C. aurantifolia | 1985 | Single reads (100Â bp) | 335 | 5179910 | 54680 | GATC | 5027732 | 97.06 |
LG98 | A | Bangladesh | C. aurantifolia | 2006 | Single reads (100Â bp) | 383 | 5164450 | 40179 | GATC | 5022236 | 97.25 |
JK143-11 | A* | Thailand | Citrus sp. | 1990 | Single reads (100Â bp) | 384 | 5278157 | 54326 | GATC | 4993196 | 94.60 |
LB100-1 | A | Seychelles | C. sinensis x Poncirus trifoliata | 2005 | Single reads (100Â bp) | 388 | 5263741 | 54697 | GATC | 5084444 | 96.59 |
JK4-1 | A | China | Citrus sp. | 1985 | Single reads (100Â bp) | 401 | 5203097 | 42527 | GATC | 5065830 | 97.36 |
LG115 | Aw | India | Citrus sp. | 2007 | Single reads (100Â bp) | 408 | 5241689 | 48679 | GATC | 4921584 | 93.89 |
LG117 | A | Bangladesh | Citrus sp. | 2009 | Single reads (100Â bp) | 429 | 5245224 | 53906 | GATC | 5046226 | 96.21 |
JM35-2 | A* | Saudi Arabia | C. aurantifolia | 1992 | Single reads (100Â bp) | 441 | 5251255 | 54005 | GATC | 4956852 | 94.39 |
JS581 | A* | Iran | C. limetta | 1997 | Single reads (100Â bp) | 450 | 5254826 | 54306 | GATC | 5019698 | 95.53 |
NCPPB 3607 | A* | India | C. aurantifolia | 1988 | Single reads (100Â bp) | 520 | 5361783 | 28525 | GATC | 5003494 | 93.32 |
LH37-1 | A | Senegal | C. paradisi | 2010 | Single reads (100Â bp) | 567 | 5405509 | 44606 | GATC | 5093867 | 94.23 |
NCPPB 3612 | A | India | C. aurantifolia | 1988 | Single reads (100Â bp) | 585 | 5349385 | 52462 | GATC | 5082867 | 95.02 |
LE3-1 | A* | Ethiopia | C. aurantifolia | 2008 | Single reads (100Â bp) | 1028 | 5300998 | 10596 | GATC | 4961125 | 93.59 |
JK48 | A* | Saudi Arabia | C. aurantifolia | 1988 | Single reads (100Â bp) | 1054 | 5253806 | 9931 | GATC | 4917915 | 93.61 |
LG97 | A | Bangladesh | Citrus sp. | 2006 | Single reads (100Â bp) | 1211 | 5252003 | 8460 | GATC | 4972934 | 94.69 |
LB302 | Aw | Florida | C. aurantifolia | 2002 | Single reads (100Â bp) | 1222 | 5239509 | 8709 | GATC | 4921146 | 93.92 |
LG102 | A | Bangladesh | Citrus sp. | 2006 | Single reads (100Â bp) | 1232 | 5305763 | 8636 | GATC | 5015092 | 94.52 |
NCPPB 3610 | A | India | Poncirus trifoliata | 1988 | Single reads (100Â bp) | 1247 | 5168073 | 7578 | GATC | 5027071 | 97.27 |
JK143-9 | A* | Thailand | Citrus sp. | 1990 | Single reads (100Â bp) | 1314 | 5227724 | 7886 | GATC | 4939914 | 94.49 |
LE116-1 | A | Mali | C. aurantifolia | 2008 | Single reads (100Â bp) | 1451 | 5355671 | 7770 | GATC | 5024296 | 93.81 |
NCPPB 3615 | A* | India | C. aurantifolia | 1989 | Single reads (100Â bp) | 1546 | 5370437 | 6587 | GATC | 4938386 | 91.96 |
JS582 | A* | Iran | C. sinensis | 1997 | Single reads (100Â bp) | 1622 | 5250292 | 6561 | GATC | 4892742 | 93.19 |
LD7-1 | A | Mali | C. aurantifolia | 2008 | Single reads (100Â bp) | 1692 | 5340074 | 6225 | GATC | 5019242 | 93.99 |
LMG 9322 | A* | Florida | C. aurantifolia | 1986 | Paired End (300/500Â bp) | 138 | 5195773 | 165596 | Genoscope | 5091334 | 97.99 |
FDC 1083 | A | Brazil | C. reticulata | 1980 | Paired End (300/500Â bp) | 140 | 5219643 | 170725 | Genoscope | 5137607 | 98.43 |
FDC 217 | A | Brazil | C. sinensis | 2003 | Paired End (300/500Â bp) | 146 | 5219970 | 148569 | Genoscope | 5138314 | 98.44 |
JJ238-10 | A | Maldives Islands | C. aurantifolia | 1987 | Paired End (300/500Â bp) | 158 | 5262497 | 164415 | Genoscope | 5125732 | 97.40 |
JF90-8 | Aw | Oman | C. aurantifolia | 1986 | Paired End (300/500Â bp) | 164 | 5283250 | 120466 | Genoscope | 5120165 | 96.91 |
CFBP 2852 | A | India | Citrus sp. | NA | Paired End (300/500Â bp) | 170 | 5274028 | 171317 | Genoscope | 5044668 | 95.65 |
X2003-3218 | Aw | Florida | Citrus sp. | 2003 | Paired End (300/500Â bp) | 171 | 5312286 | 110163 | Genoscope | 5052960 | 95.12 |
LD71a | A* | Cambodia | Citrus sp. | 2007 | Paired End (300/500Â bp) | 173 | 5282605 | 148601 | Genoscope | 4998550 | 94.62 |
JJ238-24 | A* | Thailand | C. aurantifolia | 1989 | Paired End (300/500Â bp) | 173 | 5284713 | 164186 | Genoscope | 5049892 | 95.56 |
LC80 | A | Mali | C. reticulata x C. sinensis | 2006 | Paired End (300/500Â bp) | 182 | 5232382 | 144093 | Genoscope | 5139614 | 98.23 |
JW160-1 | A | Bangladesh | C. aurantifolia | 2000 | Paired End (300/500Â bp) | 202 | 5256256 | 155164 | Genoscope | 5055053 | 96.17 |
CFBP 2911 | A* | Pakistan | Citrus sp. | 1984 | Paired End (300/500Â bp) | 202 | 5411197 | 163541 | Genoscope | 5111677 | 94.46 |
JF90-2 | A* | Oman | C. aurantifolia | 1986 | Paired End (300/500Â bp) | 225 | 5257575 | 152298 | Genoscope | 4996177 | 95.03 |
NCPPB 3562 | A | India | C. limon | 1988 | Paired End (300/500Â bp) | 230 | 5519974 | 148562 | Genoscope | 5112011 | 92.61 |
LE20-1 | A* | Ethiopia | C. aurantifolia | 2008 | Paired End (300/500Â bp) | 462 | 5309008 | 138224 | Genoscope | 5047671 | 95.08 |
NCPPB 3608 | Aw | India | C. aurantifolia | 1988 | Paired End (300/500Â bp) | 517 | 5389095 | 114454 | Genoscope | 5061159 | 93.91 |
JS584 | A* | Iran | Citrus sp. | 1997 | Paired End (300/500Â bp) | 575 | 5270551 | 144272 | Genoscope | 4961554 | 94.14 |
C40 | A | Reunion Island | C. sinensis | 1988 | Single reads (100 bp) + Mate Pair (8 kb) | 177 | 5241070 | 98653 | Genoscope | 5117602 | 97.64 |
JK2-10 | A* | Saudi Arabia | C. aurantifolia | 1988 | Single reads (100 bp) + Mate Pair (8 kb) | 318 | 5277475 | 67947 | Genoscope | 4959019 | 93.97 |