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Table 1 X. citri pv. citri strain isolation origin and sequencing information

From: Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

Strain Pathotype Geographic origin Isolation host Year isolated Reads Contig number Total (bp) N50 Sequenced by Mapped (bp) % reads mapped
JJ10-1 A Rodrigues Island C. aurantifolia 1985 Single reads (100 bp) 335 5179910 54680 GATC 5027732 97.06
LG98 A Bangladesh C. aurantifolia 2006 Single reads (100 bp) 383 5164450 40179 GATC 5022236 97.25
JK143-11 A* Thailand Citrus sp. 1990 Single reads (100 bp) 384 5278157 54326 GATC 4993196 94.60
LB100-1 A Seychelles C. sinensis x Poncirus trifoliata 2005 Single reads (100 bp) 388 5263741 54697 GATC 5084444 96.59
JK4-1 A China Citrus sp. 1985 Single reads (100 bp) 401 5203097 42527 GATC 5065830 97.36
LG115 Aw India Citrus sp. 2007 Single reads (100 bp) 408 5241689 48679 GATC 4921584 93.89
LG117 A Bangladesh Citrus sp. 2009 Single reads (100 bp) 429 5245224 53906 GATC 5046226 96.21
JM35-2 A* Saudi Arabia C. aurantifolia 1992 Single reads (100 bp) 441 5251255 54005 GATC 4956852 94.39
JS581 A* Iran C. limetta 1997 Single reads (100 bp) 450 5254826 54306 GATC 5019698 95.53
NCPPB 3607 A* India C. aurantifolia 1988 Single reads (100 bp) 520 5361783 28525 GATC 5003494 93.32
LH37-1 A Senegal C. paradisi 2010 Single reads (100 bp) 567 5405509 44606 GATC 5093867 94.23
NCPPB 3612 A India C. aurantifolia 1988 Single reads (100 bp) 585 5349385 52462 GATC 5082867 95.02
LE3-1 A* Ethiopia C. aurantifolia 2008 Single reads (100 bp) 1028 5300998 10596 GATC 4961125 93.59
JK48 A* Saudi Arabia C. aurantifolia 1988 Single reads (100 bp) 1054 5253806 9931 GATC 4917915 93.61
LG97 A Bangladesh Citrus sp. 2006 Single reads (100 bp) 1211 5252003 8460 GATC 4972934 94.69
LB302 Aw Florida C. aurantifolia 2002 Single reads (100 bp) 1222 5239509 8709 GATC 4921146 93.92
LG102 A Bangladesh Citrus sp. 2006 Single reads (100 bp) 1232 5305763 8636 GATC 5015092 94.52
NCPPB 3610 A India Poncirus trifoliata 1988 Single reads (100 bp) 1247 5168073 7578 GATC 5027071 97.27
JK143-9 A* Thailand Citrus sp. 1990 Single reads (100 bp) 1314 5227724 7886 GATC 4939914 94.49
LE116-1 A Mali C. aurantifolia 2008 Single reads (100 bp) 1451 5355671 7770 GATC 5024296 93.81
NCPPB 3615 A* India C. aurantifolia 1989 Single reads (100 bp) 1546 5370437 6587 GATC 4938386 91.96
JS582 A* Iran C. sinensis 1997 Single reads (100 bp) 1622 5250292 6561 GATC 4892742 93.19
LD7-1 A Mali C. aurantifolia 2008 Single reads (100 bp) 1692 5340074 6225 GATC 5019242 93.99
LMG 9322 A* Florida C. aurantifolia 1986 Paired End (300/500 bp) 138 5195773 165596 Genoscope 5091334 97.99
FDC 1083 A Brazil C. reticulata 1980 Paired End (300/500 bp) 140 5219643 170725 Genoscope 5137607 98.43
FDC 217 A Brazil C. sinensis 2003 Paired End (300/500 bp) 146 5219970 148569 Genoscope 5138314 98.44
JJ238-10 A Maldives Islands C. aurantifolia 1987 Paired End (300/500 bp) 158 5262497 164415 Genoscope 5125732 97.40
JF90-8 Aw Oman C. aurantifolia 1986 Paired End (300/500 bp) 164 5283250 120466 Genoscope 5120165 96.91
CFBP 2852 A India Citrus sp. NA Paired End (300/500 bp) 170 5274028 171317 Genoscope 5044668 95.65
X2003-3218 Aw Florida Citrus sp. 2003 Paired End (300/500 bp) 171 5312286 110163 Genoscope 5052960 95.12
LD71a A* Cambodia Citrus sp. 2007 Paired End (300/500 bp) 173 5282605 148601 Genoscope 4998550 94.62
JJ238-24 A* Thailand C. aurantifolia 1989 Paired End (300/500 bp) 173 5284713 164186 Genoscope 5049892 95.56
LC80 A Mali C. reticulata x C. sinensis 2006 Paired End (300/500 bp) 182 5232382 144093 Genoscope 5139614 98.23
JW160-1 A Bangladesh C. aurantifolia 2000 Paired End (300/500 bp) 202 5256256 155164 Genoscope 5055053 96.17
CFBP 2911 A* Pakistan Citrus sp. 1984 Paired End (300/500 bp) 202 5411197 163541 Genoscope 5111677 94.46
JF90-2 A* Oman C. aurantifolia 1986 Paired End (300/500 bp) 225 5257575 152298 Genoscope 4996177 95.03
NCPPB 3562 A India C. limon 1988 Paired End (300/500 bp) 230 5519974 148562 Genoscope 5112011 92.61
LE20-1 A* Ethiopia C. aurantifolia 2008 Paired End (300/500 bp) 462 5309008 138224 Genoscope 5047671 95.08
NCPPB 3608 Aw India C. aurantifolia 1988 Paired End (300/500 bp) 517 5389095 114454 Genoscope 5061159 93.91
JS584 A* Iran Citrus sp. 1997 Paired End (300/500 bp) 575 5270551 144272 Genoscope 4961554 94.14
C40 A Reunion Island C. sinensis 1988 Single reads (100 bp) + Mate Pair (8 kb) 177 5241070 98653 Genoscope 5117602 97.64
JK2-10 A* Saudi Arabia C. aurantifolia 1988 Single reads (100 bp) + Mate Pair (8 kb) 318 5277475 67947 Genoscope 4959019 93.97