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Table 2 Regions of detected recombination in the whole genome alignment of all strains

From: Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

Event

IAPAR 306 Coordinates

Alignment Coordinates

IAPAR 306 Start Gene

IAPAR 306 End Gene

Strain Presence

Putative Origin

Island

1

51959-65492

52850-66390

XAC0042

XAC0053

Aw

X. citri pv.bilvae

 

2

214827-217043

219088-221270

XAC0174

XAC0176

JM35-2, JF90-2

Unknown

 

3

243703-265596

248213-273302

XAC0198

XAC0217

Aw

X. citri pv.bilvae

Island1

4

1253042-1259543

1272074-1278440

XAC1101

XAC1107

A*

Unknown

Island2

5

1729051-1743732

1758692-1774868

XAC1497

XAC1509

Aw

Unknown

Island3

6

2931468-2932633

3000594-3001946

XAC2505

XAC2506

LE3-1, LE20-1

Unknown

 

7

3256265-3256278

3344395-3344409

Intergenic

Intergenic

JJ10-1, C40

Unknown

 

8

3525240-3525417

3615434-3615613

XAC3016

XAC3016

JS581, JS582, JS584, JK48, JK2-10

Unknown

 

9

3538019-3542103

3629086-3634840

XAC3028

XAC3029

JM35-2

Unknown

 

10

3839344-3842570

3940513-3945476

XAC3259

XAC3262

LB302, NCPPB 3218

Unknown

 

11

3850723-3851839

3954394-3955620

XAC3269

XAC3269

JJ238-24, LD71a

Unknown

 

12

3867931-3872268

3974477-3979351

XAC3288

XAC3293

NCPPB 3607

Unknown

 

13

3868626-3877708

3975273-3986173

XAC3289

XAC3298

LG115

Unknown

 

14

3872787-3872972

3980062-3980250

XAC3294

XAC3294

NCPPB 3607, JK143-9, JK143-11, LD71a, JJ238-24

Unknown

 

15

3876659-3877403

3985023-3985867

XAC3298

XAC3298

LB302, X2003-3218

Unknown

 

16

4257584-4467356

4370989-4598311

XAC3590

XAC3797

JJ238-10, LB100-1, CFBP 2852, JW160, NCPPB 3610, C40, JJ10-1, LMG 9322, JK4-1, FDC 217, IAPAR 306, FDC 1083, LC80, LG117

X. citri pv.bilvae

 

17

4257584-4414966

4370989-4541201

XAC3590

XAC3740

LG98

X. citri pv.bilvae

 

18

4364984-4366535

4490348-4491900

XAC3687

XAC3688

LG98

X. citri pv.bilvae

 

19

4952518-4988729

5094257-5137776

XAC4204

XAC4227

Aw

X. citri pv.bilvae

Island4

20

4965286-4969165

5113255-5117325

XAC4213

XAC4213

A*

Unknown

Island4

21

5004702-5016321

5154088-5165863

XAC4239

XAC4250

Aw

X. citri pv.bilvae

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