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Table 2 Regions of detected recombination in the whole genome alignment of all strains

From: Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges

Event IAPAR 306 Coordinates Alignment Coordinates IAPAR 306 Start Gene IAPAR 306 End Gene Strain Presence Putative Origin Island
1 51959-65492 52850-66390 XAC0042 XAC0053 Aw X. citri pv.bilvae  
2 214827-217043 219088-221270 XAC0174 XAC0176 JM35-2, JF90-2 Unknown  
3 243703-265596 248213-273302 XAC0198 XAC0217 Aw X. citri pv.bilvae Island1
4 1253042-1259543 1272074-1278440 XAC1101 XAC1107 A* Unknown Island2
5 1729051-1743732 1758692-1774868 XAC1497 XAC1509 Aw Unknown Island3
6 2931468-2932633 3000594-3001946 XAC2505 XAC2506 LE3-1, LE20-1 Unknown  
7 3256265-3256278 3344395-3344409 Intergenic Intergenic JJ10-1, C40 Unknown  
8 3525240-3525417 3615434-3615613 XAC3016 XAC3016 JS581, JS582, JS584, JK48, JK2-10 Unknown  
9 3538019-3542103 3629086-3634840 XAC3028 XAC3029 JM35-2 Unknown  
10 3839344-3842570 3940513-3945476 XAC3259 XAC3262 LB302, NCPPB 3218 Unknown  
11 3850723-3851839 3954394-3955620 XAC3269 XAC3269 JJ238-24, LD71a Unknown  
12 3867931-3872268 3974477-3979351 XAC3288 XAC3293 NCPPB 3607 Unknown  
13 3868626-3877708 3975273-3986173 XAC3289 XAC3298 LG115 Unknown  
14 3872787-3872972 3980062-3980250 XAC3294 XAC3294 NCPPB 3607, JK143-9, JK143-11, LD71a, JJ238-24 Unknown  
15 3876659-3877403 3985023-3985867 XAC3298 XAC3298 LB302, X2003-3218 Unknown  
16 4257584-4467356 4370989-4598311 XAC3590 XAC3797 JJ238-10, LB100-1, CFBP 2852, JW160, NCPPB 3610, C40, JJ10-1, LMG 9322, JK4-1, FDC 217, IAPAR 306, FDC 1083, LC80, LG117 X. citri pv.bilvae  
17 4257584-4414966 4370989-4541201 XAC3590 XAC3740 LG98 X. citri pv.bilvae  
18 4364984-4366535 4490348-4491900 XAC3687 XAC3688 LG98 X. citri pv.bilvae  
19 4952518-4988729 5094257-5137776 XAC4204 XAC4227 Aw X. citri pv.bilvae Island4
20 4965286-4969165 5113255-5117325 XAC4213 XAC4213 A* Unknown Island4
21 5004702-5016321 5154088-5165863 XAC4239 XAC4250 Aw X. citri pv.bilvae